Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RPS18C S18 ribosomal protein chr4:6173818-6174963 FORWARD LENGTH=152

Source: Ref_annotation from ATG

Species: Arabidoptis thaliana


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene160344 SustainPine v3.0 279
AutoFact: ribosomal protein S18-like [Oryza sativa Japonica Group] dbj|BAD30794.1| ribosomal protein S18-like [Oryza sativa Japonica Group] 7.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S18 7.813e-12
Putative C-terminus
sp_v3.0_unigene161547 SustainPine v3.0 480
AutoFact: 40S ribosomal protein S18 n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0SGX8_PARBP 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S18 8.45e-12
Putative Complete
sp_v3.0_unigene163322 SustainPine v3.0 413
AutoFact: RecName: Full=40S ribosomal protein S18 gb|AAN05613.1| ribosomal protein S18 [Argopecten irradians] 3.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S18 7.938e-12
C-terminus
sp_v3.0_unigene166013 SustainPine v3.0 243
AutoFact: 40S ribosomal protein S18 [Botryotinia fuckeliana B05.10] ref|XP_001586515.1| 40S ribosomal protein S18 [Sclerotinia sclerotiorum 1980] gb|EDN21692.1| 40S ribosomal protein S18 [Botryotinia fuckeliana B05.10] gb|EDN97648.1| 40S ribosomal protein S18 [Scle 9.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S18 7.938e-12
C-terminus
sp_v3.0_unigene183051 SustainPine v3.0 740
AutoFact: 40S ribosomal protein S18 n=9 Tax=sordariomyceta RepID=A4RPY6_MAGO7 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S18 8.064e-12
Complete
sp_v3.0_unigene188455 SustainPine v3.0 463
AutoFact: 40S ribosomal protein S18 n=4 Tax=Protostomia RepID=RS18_AEQIR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S18 7.938e-12
Putative Complete
sp_v3.0_unigene188487 SustainPine v3.0 574
AutoFact: ribosomal protein S18 [Ornithodoros parkeri] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S18 7.938e-12
Complete
sp_v3.0_unigene191101 SustainPine v3.0 421
AutoFact: Ribosomal protein S18, component of cytosolic 80S ribosome and 40S small subunit n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4SBF6_OSTLU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S18 8.32e-12
Putative Complete
sp_v3.0_unigene192155 SustainPine v3.0 663
AutoFact: 40S ribosomal protein rpS18e n=1 Tax=Tetrahymena thermophila RepID=E6PBT6_TETTH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S18 7.327e-12
Complete
sp_v3.0_unigene192520 SustainPine v3.0 505
AutoFact: Protein Y57G11C.16, confirmed by transcript evidence n=3 Tax=Caenorhabditis RepID=O18240_CAEEL 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S18 7.209e-12
Putative Complete
sp_v3.0_unigene204682 SustainPine v3.0 280
AutoFact: putative ribosomal protein S18 [Oryza sativa Japonica Group] dbj|BAD30789.1| putative ribosomal protein S18 [Oryza sativa Japonica Group] gb|EAZ38860.1| hypothetical protein OsJ_23277 [Oryza sativa Japonica Group] 1.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S18 5.39e-12
N-terminus
sp_v3.0_unigene206487 SustainPine v3.0 542
AutoFact: Ribosomal protein S18 n=4 Tax=Arachnida RepID=A6N9R2_ORNPR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene206562 SustainPine v3.0 732
AutoFact: 40S ribosomal protein S18 [Arabidopsis thaliana] ref|NP_192718.1| 40S ribosomal protein S18 [Arabidopsis thaliana] ref|NP_564434.1| 40S ribosomal protein S18 [Arabidopsis thaliana] ref|XP_002872461.1| hypothetical protein ARALYDRAFT_489832 [Arabidopsis ly 1.4013e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S18 8.581e-12
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain