Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Copia-like retrotransposable element

Source: Description from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene55496 SustainPine v3.0 424
AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 3.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-like retrotransposable element 7.797e-06
Putative C-terminus
sp_v3.0_unigene59758 SustainPine v3.0 131
AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 1.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-like retrotransposable element 7.797e-06
Internal
sp_v3.0_unigene62178 SustainPine v3.0 272
AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-like retrotransposable element 7.797e-06
Internal
sp_v3.0_unigene64782 SustainPine v3.0 222
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY09_PICAB 1.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-like retrotransposable element 7.797e-06
Internal
sp_v3.0_unigene159671 SustainPine v3.0 392
AutoFact: Unassigned protein 3.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-like retrotransposable element 1.254e-07
Internal
sp_v3.0_unigene160117 SustainPine v3.0 389
AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE 3.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-like retrotransposable element 7.515e-08
Internal
sp_v3.0_unigene163664 SustainPine v3.0 295
AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 4.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-like retrotransposable element 7.797e-06
Internal
sp_v3.0_unigene165198 SustainPine v3.0 165
AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-like retrotransposable element 7.797e-06
Internal
sp_v3.0_unigene167753 SustainPine v3.0 206
AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 2.0e-09
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00820; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Copia-like retrotransposable element 7.797e-06
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain