Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Putative retroelement

Source: Description from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene20715 SustainPine v3.0 749
AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q10RT1_ORYSJ 0.0
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Putative retroelement 5.471e-17
Complete
sp_v3.0_unigene52237 SustainPine v3.0 374
AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q10RT1_ORYSJ 2.0e-37
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Putative retroelement 5.969e-18
Putative N-terminus
sp_v3.0_unigene61370 SustainPine v3.0 225
AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 7.0e-16
FL-Next: tr=Putative uncharacterized protein; Beta vulgaris (Sugar beet). 0.0
Sma3: Putative retroelement 3.355e-07
Internal
sp_v3.0_unigene62075 SustainPine v3.0 351
AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 8.0e-25
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Putative retroelement 2.896e-06
Putative N-terminus
sp_v3.0_unigene144517 SustainPine v3.0 702
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=A2Q2C7_MEDTR 0.0
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Putative retroelement 6.164e-17
Putative Complete
sp_v3.0_unigene148461 SustainPine v3.0 580
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q7XEK0_ORYSJ 9.94922e-44
FL-Next: tr=Putative retrotransposon protein; Phyllostachys edulis. 0.0
Sma3: Putative retroelement 2.093e-06
Internal
sp_v3.0_unigene149227 SustainPine v3.0 240
AutoFact: Os11g0224300 protein (Fragment) n=2 Tax=Oryza sativa Japonica Group RepID=Q0ITS1_ORYSJ 7.0e-14
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Putative retroelement 1.354e-08
Internal
sp_v3.0_unigene164779 SustainPine v3.0 229
AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q10RT1_ORYSJ 7.0e-16
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Putative retroelement 1.819e-08
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain