Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: somatic embryogenesis

Term: GO:0010262  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene8031 SustainPine v3.0 763
AutoFact: nuclear transcription factor Y subunit B-3 [Arabidopsis thaliana] sp|O23310.1|NFYB3_ARATH RecName: Full=Nuclear transcription factor Y subunit B-3; Short=AtNF-YB-3; AltName: Full=Transcriptional activator HAP3C emb|CAB10233.1| CCAAT-binding transcription 1.4013e-45
FL-Next: sp=Nuclear transcription factor Y subunit B-3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Ccaat-binding transcription factor subunit A, putative 3.39301e-40
Complete
sp_v3.0_unigene9813 SustainPine v3.0 1168
AutoFact: B3 domain-containing transcription factor FUS3 n=2 Tax=Arabidopsis RepID=FUS3_ARATH 2.0e-35
FL-Next: tr=Transcription factor viviparous 1; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: VP1/ABI3-like protein 1.869e-08
Putative C-terminus
sp_v3.0_unigene16106 SustainPine v3.0 895
AutoFact: pfam02362, B3, B3 DNA binding domain 3.0e-19
FL-Next: tr=VP1/ABI3-like protein; Callitropsis nootkatensis. 0.0
Sma3: ABI3-like factor 2.56e-14
Putative C-terminus
sp_v3.0_unigene20374 SustainPine v3.0 1078
AutoFact: Leafy cotyledon 1 n=2 Tax=Pinaceae RepID=E3P6R9_PSEMZ 0.0
FL-Next: tr=CCAAT-box binding factor HAP3-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: Ccaat-binding transcription factor subunit A, putative 5.492e-36
Complete
sp_v3.0_unigene27551 SustainPine v3.0 1128
AutoFact: nuclear transcription factor Y subunit B-2 [Arabidopsis thaliana] sp|Q9FGJ3.1|NFYB2_ARATH RecName: Full=Nuclear transcription factor Y subunit B-2; Short=AtNF-YB-2; AltName: Full=Transcriptional activator HAP3B gb|AAK60334.1|AF385744_1 AT5g47640/MNJ7_23 [ 7.00005e-41
FL-Next: sp=Nuclear transcription factor Y subunit B-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Ccaat-binding transcription factor subunit A, putative 4.01899e-40
Complete
sp_v3.0_unigene27633 SustainPine v3.0 879
AutoFact: Leafy cotyledon 1 n=2 Tax=Pinaceae RepID=E3P6R9_PSEMZ 0.0
FL-Next: tr=CCAAT-box binding factor HAP3-like protein; Pinus contorta (Shore pine) (Lodgepole pine). 0.0
Sma3: Ccaat-binding transcription factor subunit A, putative 6.658e-36
Complete
sp_v3.0_unigene56017 SustainPine v3.0 456
AutoFact: Class IV chitinase n=7 Tax=Pinaceae RepID=C3VP99_PSEMZ 2.0e-27
FL-Next: tr=Class IV chitinase; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii). 0.0
Sma3: Chromosome chr5 scaffold_72, whole genome shotgun sequence 2.664e-14
Putative N-terminus
sp_v3.0_unigene152384 SustainPine v3.0 414
AutoFact: Nuclear transcription factor Y subunit B-3 n=2 Tax=Oomycetes RepID=D0NH93_PHYIT 5.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ccaat-binding transcription factor subunit A, putative 6.114e-36
Internal
sp_v3.0_unigene166114 SustainPine v3.0 423
AutoFact: Class IV chitinase n=7 Tax=Pinaceae RepID=C3VP99_PSEMZ 0.0
FL-Next: tr=Class II chitinase 4-1; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii). 0.0
Sma3: Class IV chitinase 2.622e-28
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain