Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: transcription factor binding

Term: GO:0008134  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene6683 SustainPine v3.0 850
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Fimbriata 1.403e-34
C-terminus
sp_v3.0_unigene8257 SustainPine v3.0 1804
AutoFact: protein kinase Ck2 regulatory subunit 2 [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Casein kinase II beta chain, putative 7.853e-16
Complete
sp_v3.0_unigene8317 SustainPine v3.0 2040
AutoFact: PREDICTED: similar to midasin-related n=1 Tax=Vitis vinifera RepID=UPI00019863A5 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene8414 SustainPine v3.0 1989
AutoFact: Ras-related small GTP-binding family protein [Arabidopsis thaliana] sp|Q9C5J9.1|Y5483_ARATH RecName: Full=Uncharacterized GTP-binding protein At5g64813 gb|AAK25913.1|AF360203_1 unknown protein [Arabidopsis thaliana] gb|AAK64108.1| unknown protein [Arabido 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RAB, member of RAS oncogene family-like 3 4.622e-09
Complete
sp_v3.0_unigene9128 SustainPine v3.0 1012
AutoFact: Ras-related protein RABC1 n=2 Tax=Arabidopsis RepID=RABC1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Rab18/RabC-family small GTPase 4.197e-19
Complete
sp_v3.0_unigene13468 SustainPine v3.0 1890
AutoFact: Retinoblastoma-related protein n=1 Tax=Cocos nucifera RepID=RBR_COCNU 0.0
FL-Next: sp=Retinoblastoma-related protein; Cocos nucifera (Coconut palm). 0.0
Sma3: Retinoblastoma-related protein 1 4.89e-19
C-terminus
sp_v3.0_unigene20332 SustainPine v3.0 1495
AutoFact: protein kinase Ck2 regulatory subunit 2 [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Casein kinase II beta chain, putative 6.41e-16
Complete
sp_v3.0_unigene22984 SustainPine v3.0 1160
AutoFact: Ras-related protein Rab-18 [Arabidopsis thaliana] ref|NP_001077675.1| Ras-related protein Rab-18 [Arabidopsis thaliana] ref|NP_001117435.1| Ras-related protein Rab-18 [Arabidopsis thaliana] sp|O23657.1|RABC1_ARATH RecName: Full=Ras-related protein RABC1; 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: GTP-binding protein 4.741e-20
Complete
sp_v3.0_unigene23936 SustainPine v3.0 1517
AutoFact: Ras-related protein RABE1c n=6 Tax=rosids RepID=RAE1C_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: GTP-binding protein 3.466e-13
Complete
sp_v3.0_unigene24537 SustainPine v3.0 709
AutoFact: Ras-related protein Rab-1A n=52 Tax=Eukaryota RepID=RAB1A_HUMAN 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small GTP-binding protein 1.338e-19
Complete
sp_v3.0_unigene29808 SustainPine v3.0 988
AutoFact: Ras-related protein Rab-18 n=4 Tax=Poaceae RepID=B6TCF9_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Rab18/RabC-family small GTPase 4.127e-19
Complete
sp_v3.0_unigene30016 SustainPine v3.0 710
AutoFact: Ras-related protein Rab-18 n=4 Tax=Poaceae RepID=B6TCF9_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Rab18/RabC-family small GTPase 3.776e-20
N-terminus
sp_v3.0_unigene32223 SustainPine v3.0 666
AutoFact: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gb|AAD30580.1|AC007260_11 Similar to SRG1 [Arabidopsis thaliana] gb|AAK28635.1|AF360338_1 putative flavanone 3-hydroxylase [Arabidopsis thaliana] gb|AAK93753.1| putati 5.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_186, whole genome shotgun sequence 6.656e-11
C-terminus
sp_v3.0_unigene36998 SustainPine v3.0 3863
AutoFact: Retinoblastoma-related protein n=1 Tax=Cocos nucifera RepID=RBR_COCNU 0.0
FL-Next: sp=Retinoblastoma-related protein; Cocos nucifera (Coconut palm). 0.0
Sma3: Retinoblastoma-related protein 1 5.524e-19
Complete
sp_v3.0_unigene37934 SustainPine v3.0 996
AutoFact: Ras-related protein Rab-18 [Arabidopsis thaliana] ref|NP_001077675.1| Ras-related protein Rab-18 [Arabidopsis thaliana] ref|NP_001117435.1| Ras-related protein Rab-18 [Arabidopsis thaliana] sp|O23657.1|RABC1_ARATH RecName: Full=Ras-related protein RABC1; 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: GTP-binding protein 4.763e-20
Complete
sp_v3.0_unigene40019 SustainPine v3.0 566
AutoFact: GTP-binding protein yptv3, putative n=1 Tax=Ricinus communis RepID=B9T5U9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RAB, member of RAS oncogene family-like 3 4.556e-09
Putative N-terminus
sp_v3.0_unigene41826 SustainPine v3.0 296
AutoFact: Retinoblastoma-related protein n=1 Tax=Ricinus communis RepID=RBR_RICCO 3.0e-33
FL-Next: sp=Retinoblastoma-related protein; Ricinus communis (Castor bean). 0.0
Sma3: Retinoblastoma-related protein 1 4.049e-19
Internal
sp_v3.0_unigene43053 SustainPine v3.0 308
AutoFact: Retinoblastoma-related protein 1 n=2 Tax=Oryza sativa RepID=RBR1_ORYSJ 4.0e-36
FL-Next: sp=Retinoblastoma-related protein 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retinoblastoma-related protein 1 5.199e-19
Internal
sp_v3.0_unigene43396 SustainPine v3.0 147
AutoFact: Retinoblastoma-related protein 1 n=1 Tax=Triticum aestivum RepID=RBR1_WHEAT 5.0e-18
FL-Next: sp=Retinoblastoma-related protein 1; Triticum aestivum (Wheat). 0.0
Sma3: Retinoblastoma-related protein 1 5.199e-19
Internal
sp_v3.0_unigene52679 SustainPine v3.0 200
AutoFact: Retinoblastoma-related protein 1 n=1 Tax=Nicotiana tabacum RepID=RBR1_TOBAC 4.0e-13
FL-Next: sp=Retinoblastoma-related protein 1; Nicotiana tabacum (Common tobacco). 0.0
Sma3: Retinoblastoma-related protein 1 1.091e-19
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain