Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: general RNA polymerase II transcription factor activity

Term: GO:0016251  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene6229 SustainPine v3.0 1586
AutoFact: transcription initiation factor TFIIH subunit H3 [Arabidopsis thaliana] gb|AAM61618.1| unknown [Arabidopsis thaliana] gb|ABE77412.1| At1g18340 [Arabidopsis thaliana] gb|AEE29705.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene7498 SustainPine v3.0 1626
AutoFact: transcription initiation factor TFIIH subunit H2 [Arabidopsis thaliana] gb|AAM90909.1|AF499443_1 p44/SSL1-like protein [Arabidopsis thaliana] gb|AAC97995.1| Similar to gb|Z30094 basic transcripion factor 2, 44 kD subunit from Homo sapiens. EST gb|W43325 c 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative Complete
sp_v3.0_unigene12941 SustainPine v3.0 1637
AutoFact: putative transcription initiation factor IIF beta subunit [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transcription initiation factor IIF subunit beta, putative 5.167e-09
Complete
sp_v3.0_unigene15856 SustainPine v3.0 727
AutoFact: PREDICTED: similar to TAF7 (TBP-ASSOCIATED FACTOR 7); general RNA polymerase II transcription factor n=1 Tax=Vitis vinifera RepID=UPI00019835C9 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AT1G55300 protein 2.121e-09
N-terminus
sp_v3.0_unigene18642 SustainPine v3.0 693
AutoFact: putative transcription factor [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
C-terminus
sp_v3.0_unigene34959 SustainPine v3.0 990
AutoFact: putative transcription initiation factor IIF beta subunit [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transcription initiation factor IIF subunit beta, putative 4.296e-09
N-terminus
sp_v3.0_unigene72215 SustainPine v3.0 297
AutoFact: PREDICTED: similar to TAF7 (TBP-ASSOCIATED FACTOR 7); general RNA polymerase II transcription factor n=1 Tax=Vitis vinifera RepID=UPI00019835C9 0.0001
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene100963 SustainPine v3.0 1040
AutoFact: PREDICTED: similar to TAF7 (TBP-ASSOCIATED FACTOR 7); general RNA polymerase II transcription factor n=1 Tax=Vitis vinifera RepID=UPI00019835C9 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AT1G55300 protein 2.121e-09
Putative Complete
sp_v3.0_unigene102649 SustainPine v3.0 555
AutoFact: transcription initiation factor TFIIF beta subunit [Arabidopsis thaliana] gb|AAF87120.1|AC006434_16 F10A5.27 [Arabidopsis thaliana] gb|AAG40024.1|AF324673_1 At1g75700 [Arabidopsis thaliana] gb|AAG42013.1|AF327423_1 putative transcription initiation factor 3.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transcription initiation factor IIF subunit beta, putative 5.167e-09
C-terminus
sp_v3.0_unigene164507 SustainPine v3.0 137
AutoFact: putative transcription initiation factor IIF beta subunit [Oryza sativa Japonica Group] 3.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transcription initiation factor IIF subunit beta, putative 4.622e-09
Internal
sp_v3.0_unigene183928 SustainPine v3.0 561
AutoFact: putative transcription factor [Arabidopsis thaliana] 2.0e-10
FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain