Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: small nucleolar ribonucleoprotein complex

Term: GO:0005732  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene4748 SustainPine v3.0 715
AutoFact: Os08g0155000 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q6ZJR7_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U3 small nucleolar ribonucleoprotein protein imp4, putative 3.745e-09
Putative N-terminus
sp_v3.0_unigene10474 SustainPine v3.0 326
AutoFact: H/ACA ribonucleoprotein complex subunit 1-like protein 1 n=5 Tax=Andropogoneae RepID=B6TFJ5_MAIZE 5.0e-32
FL-Next: sp=Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: H/ACA ribonucleoprotein complex subunit 1-like protein 1 9.017e-09
Internal
sp_v3.0_unigene17950 SustainPine v3.0 718
AutoFact: H/ACA ribonucleoprotein complex subunit 2 [Oryza sativa Indica Group] 5.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: H/ACA ribonucleoprotein complex subunit 2 4.106e-08
C-terminus
sp_v3.0_unigene22614 SustainPine v3.0 881
AutoFact: GRP multi-domain protein 2.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene27862 SustainPine v3.0 515
AutoFact: Ribosomal protein L7Ae/L30e/S12e/Gadd4, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0P0D1_PHYIT 7.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: H/ACA ribonucleoprotein complex subunit 2 4.621e-08
Complete
sp_v3.0_unigene39419 SustainPine v3.0 474
AutoFact: H/ACA ribonucleoprotein complex subunit 1-like protein 1 n=5 Tax=Andropogoneae RepID=B6TFJ5_MAIZE 7.0e-08
FL-Next: sp=Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: H/ACA ribonucleoprotein complex subunit 1-like protein 1 1.411e-09
Putative C-terminus
sp_v3.0_unigene40353 SustainPine v3.0 524
AutoFact: H/ACA ribonucleoprotein complex subunit 1-like protein 1 n=5 Tax=Andropogoneae RepID=B6TFJ5_MAIZE 0.0
FL-Next: sp=Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromosome chr8 scaffold_34, whole genome shotgun sequence 0.0
Putative C-terminus
sp_v3.0_unigene73917 SustainPine v3.0 290
AutoFact: Small nucleolar RNP protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NGL5_COPC7 1.0e-22
FL-Next: sp=Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: H/ACA ribonucleoprotein complex subunit 1-like protein 1 6.913e-09
N-terminus
sp_v3.0_unigene84077 SustainPine v3.0 284
AutoFact: DUF3729 multi-domain protein 1.0e-08
coding
sp_v3.0_unigene110369 SustainPine v3.0 179
AutoFact: H/ACA ribonucleoprotein complex subunit 1-like protein 1 n=5 Tax=Andropogoneae RepID=B6TFJ5_MAIZE 1.0e-13
FL-Next: sp=Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: H/ACA ribonucleoprotein complex subunit 1-like protein 1 6.229e-09
Internal
sp_v3.0_unigene142008 SustainPine v3.0 359
AutoFact: Probable fibrillarin (Fragment) n=2 Tax=Picea RepID=O65058_PICMA 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Fibrillarin, putative 6.336e-08
Putative N-terminus
sp_v3.0_unigene152034 SustainPine v3.0 525
AutoFact: Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_1 n=1 Tax=Blastocystis hominis RepID=D8LXA9_BLAHO 7.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: H/ACA ribonucleoprotein complex subunit 2 4.621e-08
Complete
sp_v3.0_unigene153270 SustainPine v3.0 383
AutoFact: H/ACA ribonucleoprotein complex subunit 2 [Oryza sativa Indica Group] 1.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: H/ACA ribonucleoprotein complex subunit 2 4.621e-08
C-terminus
sp_v3.0_unigene153969 SustainPine v3.0 393
AutoFact: PREDICTED: similar to nucleolar protein family A, member 2 (H/ACA small nucleolar RNPs) n=1 Tax=Ciona intestinalis RepID=UPI00006A7302 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: H/ACA ribonucleoprotein complex subunit 2 4.621e-08
C-terminus
sp_v3.0_unigene154780 SustainPine v3.0 219
AutoFact: H/ACA ribonucleoprotein complex subunit 2 [Oryza sativa Indica Group] 1.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: H/ACA ribonucleoprotein complex subunit 2 4.621e-08
Internal
sp_v3.0_unigene183084 SustainPine v3.0 517
AutoFact: Nucleolar protein family A n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CGX1_9EUKA 3.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: H/ACA ribonucleoprotein complex subunit 2 4.621e-08
Complete
sp_v3.0_unigene186056 SustainPine v3.0 646
AutoFact: H/ACA ribonucleoprotein complex subunit 2 [Oryza sativa Indica Group] 2.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: H/ACA ribonucleoprotein complex subunit 2 4.621e-08
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain