Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: double-strand break repair via nonhomologous end joining

Term: GO:0006303  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene4491 SustainPine v3.0 555
• AutoFact: DNA-dependent protein kinase subunit [Dictyostelium discoideum AX4] sp|Q54UC0.2|PRKDC_DICDI RecName: Full=DNA-dependent protein kinase catalytic subunit; Short=DNA-PK catalytic subunit; Short=DNA-PKcs gb|EAL66880.2| DNA-dependent protein kinase subunit [D 4.0e-06
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene6372 SustainPine v3.0 2622
• AutoFact: Ku70 homolog [Populus nigra] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ku70-like protein 4.296e-09
Complete
sp_v3.0_unigene13028 SustainPine v3.0 934
• AutoFact: Ku P80 DNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RDD3_RICCO 8.0e-39
• FL-Next: tr=KU80-like protein; Pinus sylvestris (Scots pine). 0.0
C-terminus
sp_v3.0_unigene15329 SustainPine v3.0 1055
• AutoFact: RecName: Full=ATP-dependent DNA helicase 2 subunit KU80; AltName: Full=ATP-dependent DNA helicase 2 subunit 2; AltName: Full=ATP-dependent DNA helicase II 80 kDa subunit gb|AAS01977.1| putative H-box binding protein, KAP2, with alternative splicing isofor 2.0e-22
• FL-Next: tr=KU80-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: KAP-2 5.087e-09
C-terminus
sp_v3.0_unigene50551 SustainPine v3.0 194
• AutoFact: Unassigned protein
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene55730 SustainPine v3.0 366
• AutoFact: Unassigned protein
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene62996 SustainPine v3.0 198
• AutoFact: RecName: Full=ATP-dependent DNA helicase 2 subunit KU80; AltName: Full=ATP-dependent DNA helicase 2 subunit 2; AltName: Full=ATP-dependent DNA helicase II 80 kDa subunit gb|AAS01977.1| putative H-box binding protein, KAP2, with alternative splicing isofor 8.0e-17
• FL-Next: tr=KU80-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: KAP-2 2.848e-13
Internal
sp_v3.0_unigene65372 SustainPine v3.0 92
• AutoFact: PI3_PI4_kinase domain containing protein 1.0e-05
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Internal
sp_v3.0_unigene68655 SustainPine v3.0 193
• AutoFact: PREDICTED: similar to DNA-dependent protein kinase catalytic subunit [Ornithorhynchus anatinus] 6.0e-10
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene76017 SustainPine v3.0 305
• AutoFact: DNA-dependent protein kinase subunit [Dictyostelium discoideum AX4] sp|Q54UC0.2|PRKDC_DICDI RecName: Full=DNA-dependent protein kinase catalytic subunit; Short=DNA-PK catalytic subunit; Short=DNA-PKcs gb|EAL66880.2| DNA-dependent protein kinase subunit [D 1.0e-08
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene77832 SustainPine v3.0 396
• AutoFact: KU80-like protein (Fragment) n=1 Tax=Pinus sylvestris RepID=B1PYP3_PINSY 3.0e-38
• FL-Next: tr=KU80-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: KAP-2 5.455e-09
N-terminus
sp_v3.0_unigene78454 SustainPine v3.0 174
• AutoFact: KAP-2 n=1 Tax=Medicago truncatula RepID=Q8S563_MEDTR 4.0e-17
• FL-Next: tr=KU80-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: KAP-2 3.602e-13
Internal
sp_v3.0_unigene81419 SustainPine v3.0 172
• AutoFact: ku P80 DNA helicase, putative; K10885 ATP-dependent DNA helicase 2 subunit 2 4.0e-11
• FL-Next: tr=KU80-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: KAP-2 3.246e-09
Internal
sp_v3.0_unigene93899 SustainPine v3.0 323
• AutoFact: DNA-dependent protein kinase subunit [Dictyostelium discoideum AX4] sp|Q54UC0.2|PRKDC_DICDI RecName: Full=DNA-dependent protein kinase catalytic subunit; Short=DNA-PK catalytic subunit; Short=DNA-PKcs gb|EAL66880.2| DNA-dependent protein kinase subunit [D 5.0e-12
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
C-terminus
sp_v3.0_unigene100009 SustainPine v3.0 415
• AutoFact: DNA-dependent protein kinase subunit [Dictyostelium discoideum AX4] sp|Q54UC0.2|PRKDC_DICDI RecName: Full=DNA-dependent protein kinase catalytic subunit; Short=DNA-PK catalytic subunit; Short=DNA-PKcs gb|EAL66880.2| DNA-dependent protein kinase subunit [D 2.0e-14
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
C-terminus
sp_v3.0_unigene102787 SustainPine v3.0 435
• AutoFact: KU80-like protein (Fragment) n=1 Tax=Pinus sylvestris RepID=B1PYP3_PINSY 7.0e-31
• FL-Next: tr=KU80-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: KAP-2 6.229e-09
Internal
sp_v3.0_unigene106462 SustainPine v3.0 491
• AutoFact: DNA-dependent protein kinase catalytic subunit [Gallus gallus] dbj|BAA36956.1| DNA-dependent protein kinase catalytic subunit [Gallus gallus] 2.0e-23
• FL-Next: sp=Serine/threonine-protein kinase TOR; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene106505 SustainPine v3.0 366
• AutoFact: Unassigned protein
• FL-Next: tr=KU80-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: KAP-2 3.108e-13
Internal
sp_v3.0_unigene107150 SustainPine v3.0 243
• AutoFact: RecName: Full=ATP-dependent DNA helicase 2 subunit KU80; AltName: Full=ATP-dependent DNA helicase 2 subunit 2; AltName: Full=ATP-dependent DNA helicase II 80 kDa subunit gb|AAS01977.1| putative H-box binding protein, KAP2, with alternative splicing isofor 1.0e-22
• FL-Next: tr=KU80-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: KAP-2 2.427e-13
Internal
sp_v3.0_unigene107272 SustainPine v3.0 255
• AutoFact: ATP-dependent DNA helicase 2 subunit KU80 n=1 Tax=Oryza sativa Japonica Group RepID=KU80_ORYSJ 9.0e-08
• FL-Next: tr=KU80-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: KAP-2 1.902e-13
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain