Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nuclear-transcribed mRNA catabolic process, exonucleolytic

Term: GO:0000291  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene3679 SustainPine v3.0 4014
AutoFact: putative 5-3 exoribonuclease [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 5'->3' exoribonuclease, putative 8.416e-16
Complete
sp_v3.0_unigene7349 SustainPine v3.0 2039
AutoFact: Os01g0872700 protein n=3 Tax=Oryza sativa RepID=Q5N739_ORYSJ 0.0
FL-Next: sp=5'-3' exoribonuclease 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: 5'->3' exoribonuclease, putative 2.293e-16
C-terminus
sp_v3.0_unigene9831 SustainPine v3.0 2609
AutoFact: Os01g0872700 protein n=3 Tax=Oryza sativa RepID=Q5N739_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 5'->3' exoribonuclease, putative 2.888e-16
Complete
sp_v3.0_unigene10173 SustainPine v3.0 256
AutoFact: putative 5-3 exoribonuclease [Oryza sativa Japonica Group] 5.0e-38
FL-Next: sp=5'-3' exoribonuclease 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: 5'->3' exoribonuclease, putative 3.297e-16
Internal
sp_v3.0_unigene13903 SustainPine v3.0 662
AutoFact: putative 5-3 exoribonuclease [Oryza sativa Japonica Group] 0.0
FL-Next: Isoform 2 of 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 0.0
Sma3: 5'->3' exoribonuclease, putative 6.254e-16
Internal
sp_v3.0_unigene22301 SustainPine v3.0 421
AutoFact: 5'-3' exoribonuclease 3 [Arabidopsis thaliana] sp|Q9FQ03.1|XRN3_ARATH RecName: Full=5'-3' exoribonuclease 3; AltName: Full=Protein EXORIBONUCLEASE 3 gb|AAG40732.1|AF286719_1 XRN3 [Arabidopsis thaliana] gb|AEE35742.1| 5'-3' exoribonuclease 3 [Arabidopsis t 0.0
FL-Next: Isoform 2 of 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 0.0
Sma3: 5'->3' exoribonuclease, putative 6.254e-16
N-terminus
sp_v3.0_unigene25224 SustainPine v3.0 1176
AutoFact: putative 5-3 exoribonuclease [Oryza sativa Japonica Group] 0.0
FL-Next: Isoform 2 of 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 0.0
Sma3: 5'->3' exoribonuclease, putative 8.808e-16
N-terminus
sp_v3.0_unigene29752 SustainPine v3.0 2409
AutoFact: 5'->3' exoribonuclease, putative n=1 Tax=Ricinus communis RepID=B9R871_RICCO 0.0
FL-Next: sp=5'-3' exoribonuclease 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: 5'->3' exoribonuclease, putative 8.416e-16
N-terminus
sp_v3.0_unigene34556 SustainPine v3.0 372
AutoFact: Os01g0872700 protein n=3 Tax=Oryza sativa RepID=Q5N739_ORYSJ 2.0e-35
FL-Next: Isoform 2 of 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 0.0
Sma3: 5'->3' exoribonuclease, putative 4.786e-16
Internal
sp_v3.0_unigene35211 SustainPine v3.0 358
AutoFact: 5'->3' exoribonuclease, putative n=1 Tax=Ricinus communis RepID=B9RET3_RICCO 0.0
FL-Next: sp=5'-3' exoribonuclease 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: 5'->3' exoribonuclease, putative 3.297e-16
Internal
sp_v3.0_unigene37661 SustainPine v3.0 3746
AutoFact: Os01g0872700 protein n=3 Tax=Oryza sativa RepID=Q5N739_ORYSJ 0.0
FL-Next: sp=5'-3' exoribonuclease 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: 5'->3' exoribonuclease, putative 5.109e-16
Complete
sp_v3.0_unigene37804 SustainPine v3.0 1917
AutoFact: 5'->3' exoribonuclease, putative n=1 Tax=Ricinus communis RepID=B9R871_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 5'->3' exoribonuclease, putative 1.795e-16
Complete
sp_v3.0_unigene51650 SustainPine v3.0 157
AutoFact: 5'-3' exoribonuclease 3 [Arabidopsis thaliana] sp|Q9FQ03.1|XRN3_ARATH RecName: Full=5'-3' exoribonuclease 3; AltName: Full=Protein EXORIBONUCLEASE 3 gb|AAG40732.1|AF286719_1 XRN3 [Arabidopsis thaliana] gb|AEE35742.1| 5'-3' exoribonuclease 3 [Arabidopsis t 8.0e-12
FL-Next: Isoform 2 of 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 0.0
Sma3: 5'->3' exoribonuclease, putative 4.798e-08
Internal
sp_v3.0_unigene67351 SustainPine v3.0 314
AutoFact: 5'-3' exoribonuclease 3 [Arabidopsis thaliana] sp|Q9FQ03.1|XRN3_ARATH RecName: Full=5'-3' exoribonuclease 3; AltName: Full=Protein EXORIBONUCLEASE 3 gb|AAG40732.1|AF286719_1 XRN3 [Arabidopsis thaliana] gb|AEE35742.1| 5'-3' exoribonuclease 3 [Arabidopsis t 2.0e-19
FL-Next: sp=5'-3' exoribonuclease 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: 5'->3' exoribonuclease, putative 1.06e-11
Internal
sp_v3.0_unigene95954 SustainPine v3.0 431
AutoFact: 5'->3' exoribonuclease, putative n=1 Tax=Ricinus communis RepID=B9R871_RICCO 0.0
FL-Next: Isoform 2 of 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 0.0
Sma3: 5'->3' exoribonuclease, putative 4.978e-16
Internal
sp_v3.0_unigene102447 SustainPine v3.0 770
AutoFact: putative 5-3 exoribonuclease [Oryza sativa Japonica Group] 0.0
FL-Next: Isoform 2 of 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 0.0
Sma3: 5'->3' exoribonuclease, putative 6.73e-16
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain