Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: double-strand break repair

Term: GO:0006302  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene3527 SustainPine v3.0 2044
• AutoFact: double-strand break repair protein MRE11 [Arabidopsis thaliana] sp|Q9XGM2.1|MRE11_ARATH RecName: Full=Double-strand break repair protein MRE11 emb|CAB50793.1| Mre11 protein [Arabidopsis thaliana] dbj|BAB10749.1| DNA repair and meiosis protein Mre11 [Arabi 0.0
• FL-Next: sp=Double-strand break repair protein MRE11; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Double-strand break repair protein MRE11 7.997e-09
C-terminus
sp_v3.0_unigene9566 SustainPine v3.0 636
• AutoFact: DNA ligase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SQI2_VITVI 0.0
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA ligase 6.943e-10
Internal
sp_v3.0_unigene9905 SustainPine v3.0 669
• AutoFact: double-strand break repair protein MRE11 [Arabidopsis thaliana] sp|Q9XGM2.1|MRE11_ARATH RecName: Full=Double-strand break repair protein MRE11 emb|CAB50793.1| Mre11 protein [Arabidopsis thaliana] dbj|BAB10749.1| DNA repair and meiosis protein Mre11 [Arabi 0.0
• FL-Next: sp=Double-strand break repair protein MRE11; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Mre11 DNA repair/recombination protein 1.336e-12
Internal
sp_v3.0_unigene27585 SustainPine v3.0 1284
• AutoFact: meiotic nuclear division protein 1-like protein [Arabidopsis thaliana] sp|Q8GYD2.1|MND1_ARATH RecName: Full=Meiotic nuclear division protein 1 homolog; Short=AtMND1; AltName: Full=Meiotic nuclear division 1-like protein dbj|BAC42364.1| unknown protein [Ar 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene38938 SustainPine v3.0 545
• AutoFact: DNA ligase n=1 Tax=Populus nigra RepID=Q0PCF8_POPNI 0.0
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA ligase 7.815e-10
Internal
sp_v3.0_unigene38962 SustainPine v3.0 987
• AutoFact: XRCC4 homolog [Populus nigra] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome chr18 scaffold_122, whole genome shotgun sequence 5.783e-06
N-terminus
sp_v3.0_unigene41771 SustainPine v3.0 869
• AutoFact: DNA ligase n=1 Tax=Oryza sativa RepID=Q01KE4_ORYSA 0.0
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene45112 SustainPine v3.0 596
• AutoFact: DNA ligase n=1 Tax=Oryza sativa RepID=Q01KE4_ORYSA 0.0
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene49946 SustainPine v3.0 278
• AutoFact: DNA ligase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SQI2_VITVI 2.0e-13
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene51208 SustainPine v3.0 343
• AutoFact: DNA ligase 4 n=2 Tax=Arabidopsis RepID=DNLI4_ARATH 4.99997e-41
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene53275 SustainPine v3.0 229
• AutoFact: DNA ligase n=1 Tax=Populus nigra RepID=Q0PCF8_POPNI 6.0e-31
• FL-Next: sp=Putative DNA ligase 4; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene62061 SustainPine v3.0 240
• AutoFact: DNA ligase 4 n=2 Tax=Arabidopsis RepID=DNLI4_ARATH 3.0e-28
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA ligase 5.004e-10
Internal
sp_v3.0_unigene62444 SustainPine v3.0 248
• AutoFact: DNA ligase n=1 Tax=Populus trichocarpa RepID=B9IN68_POPTR 2.0e-08
• FL-Next: sp=Putative DNA ligase 4; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene64037 SustainPine v3.0 244
• AutoFact: DNA ligase n=2 Tax=Selaginella moellendorffii RepID=D8SJP8_SELML 4.0e-28
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene64884 SustainPine v3.0 151
• AutoFact: DNA ligase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SQI2_VITVI 5.0e-11
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA ligase 5.912e-07
Internal
sp_v3.0_unigene81638 SustainPine v3.0 142
• AutoFact: DNA ligase n=1 Tax=Oryza sativa RepID=Q01KE4_ORYSA 3.0e-15
• FL-Next: sp=Putative DNA ligase 4; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DNA ligase 7.815e-10
Internal
sp_v3.0_unigene122593 SustainPine v3.0 447
• AutoFact: Double-strand break repair protein MRE11 n=2 Tax=Arabidopsis RepID=MRE11_ARATH 2.0e-36
• FL-Next: sp=Double-strand break repair protein MRE11; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Double-strand break repair protein MRE11 6.663e-09
N-terminus
sp_v3.0_unigene125766 SustainPine v3.0 241
• AutoFact: DNA ligase n=1 Tax=Populus nigra RepID=Q0PCF8_POPNI 1.0e-23
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA ligase 3.617e-10
Internal
sp_v3.0_unigene140668 SustainPine v3.0 682
• AutoFact: XRCC4 homolog [Populus nigra] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome chr18 scaffold_122, whole genome shotgun sequence 5.783e-06
N-terminus
sp_v3.0_unigene165363 SustainPine v3.0 461
• AutoFact: double-strand break repair protein MRE11 [Arabidopsis thaliana] sp|Q9XGM2.1|MRE11_ARATH RecName: Full=Double-strand break repair protein MRE11 emb|CAB50793.1| Mre11 protein [Arabidopsis thaliana] dbj|BAB10749.1| DNA repair and meiosis protein Mre11 [Arabi 0.0
• FL-Next: sp=Double-strand break repair protein MRE11; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Mre11 DNA repair/recombination protein 1.336e-12
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain