Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Isomerases, Intramolecular transferases (mutases), Transferring other groups.

Term: EC:5.4.99.-  Help

Source: EC from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene3495 SustainPine v3.0 2667
• AutoFact: tRNA pseudouridine synthase family protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCD2_CUCME 0.0
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 3.099e-12
Putative Complete
sp_v3.0_unigene4149 SustainPine v3.0 543
• AutoFact: Pseudouridine synthase n=1 Tax=Ricinus communis RepID=B9RVG5_RICCO 1.99993e-41
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 2.528e-06
Putative C-terminus
sp_v3.0_unigene7136 SustainPine v3.0 2147
• AutoFact: tRNA pseudouridine synthase family protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCD2_CUCME 0.0
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 3.099e-12
C-terminus
sp_v3.0_unigene12592 SustainPine v3.0 1748
• AutoFact: RNA pseudourine synthase 5 [Arabidopsis thaliana] sp|Q5M721.2|PUS5_ARATH RecName: Full=RNA pseudourine synthase 5; AltName: Full=RNA pseudouridylate synthase 5; AltName: Full=RNA-uridine isomerase 5 gb|AEE78921.1| RNA pseudourine synthase 5 [Arabidopsis t 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-uridine isomerase 5 1.988e-09
Complete
sp_v3.0_unigene12908 SustainPine v3.0 1656
• AutoFact: Cycloartenol synthase n=2 Tax=Pinaceae RepID=Q9FQM1_ABIMA 0.0
• FL-Next: tr=Cycloartenol synthase; Abies magnifica (Red fir). 0.0
• Sma3: Cycloartenol synthase 0.0
C-terminus
sp_v3.0_unigene14206 SustainPine v3.0 882
• AutoFact: RNA pseudourine synthase 6 [Arabidopsis thaliana] sp|Q9SVS0.1|PUS6_ARATH RecName: Full=RNA pseudourine synthase 6, chloroplastic; AltName: Full=RNA pseudouridylate synthase 6; AltName: Full=RNA-uridine isomerase 6; Flags: Precursor emb|CAB36821.1| hypothe 0.0
• FL-Next: sp=RNA pseudourine synthase 6, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: RNA-uridine isomerase 6 8.693e-10
C-terminus
sp_v3.0_unigene14483 SustainPine v3.0 454
• AutoFact: putative ribosomal large subunit pseudouridine synthase C protein [Oryza sativa Japonica Group] dbj|BAD10435.1| putative ribosomal large subunit pseudouridine synthase C protein [Oryza sativa Japonica Group] 7.0e-31
• FL-Next: sp=RNA pseudourine synthase 3, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: RNA-uridine isomerase 3 1.656e-09
Putative C-terminus
sp_v3.0_unigene14510 SustainPine v3.0 411
• AutoFact: RNA pseudourine synthase 6 [Arabidopsis thaliana] sp|Q9SVS0.1|PUS6_ARATH RecName: Full=RNA pseudourine synthase 6, chloroplastic; AltName: Full=RNA pseudouridylate synthase 6; AltName: Full=RNA-uridine isomerase 6; Flags: Precursor emb|CAB36821.1| hypothe 6.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-uridine isomerase 6 9.576e-10
Internal
sp_v3.0_unigene15089 SustainPine v3.0 1425
• AutoFact: Pseudouridine synthase (Fragment) n=2 Tax=Vitis vinifera RepID=D7T696_VITVI 0.0
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 1.624e-22
Putative Complete
sp_v3.0_unigene15509 SustainPine v3.0 1672
• AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AE97_PICSI 0.0
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 6.152e-23
Complete
sp_v3.0_unigene22280 SustainPine v3.0 665
• AutoFact: Cycloartenol synthase n=2 Tax=Pinaceae RepID=Q9FQM1_ABIMA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cycloartenol synthase 0.0
C-terminus
sp_v3.0_unigene26347 SustainPine v3.0 393
• AutoFact: Cycloartenol synthase n=2 Tax=Pinaceae RepID=Q9FQM1_ABIMA 9.0e-31
• FL-Next: tr=Cycloartenol synthase; Abies magnifica (Red fir). 0.0
• Sma3: Cycloartenol synthase 0.0
N-terminus
sp_v3.0_unigene26766 SustainPine v3.0 765
• AutoFact: Cycloartenol synthase n=2 Tax=Pinaceae RepID=Q9FQM1_ABIMA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cycloartenol synthase 0.0
C-terminus
sp_v3.0_unigene27105 SustainPine v3.0 550
• AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AA47_PICSI 0.0
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 1.608e-16
C-terminus
sp_v3.0_unigene29167 SustainPine v3.0 2249
• AutoFact: Pseudouridine synthase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TFS0_VITVI 0.0
• FL-Next: sp=Pseudouridine synthase; Vitis vinifera (Grape). 0.0
• Sma3: Pseudouridylate synthase 1.486e-25
Putative Complete
sp_v3.0_unigene39804 SustainPine v3.0 683
• AutoFact: RNA pseudourine synthase 6 [Arabidopsis thaliana] sp|Q9SVS0.1|PUS6_ARATH RecName: Full=RNA pseudourine synthase 6, chloroplastic; AltName: Full=RNA pseudouridylate synthase 6; AltName: Full=RNA-uridine isomerase 6; Flags: Precursor emb|CAB36821.1| hypothe 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-uridine isomerase 6 9.576e-10
Putative C-terminus
sp_v3.0_unigene41275 SustainPine v3.0 500
• AutoFact: RNA pseudourine synthase 3, mitochondrial n=3 Tax=Arabidopsis RepID=PUS3_ARATH 1.0e-21
• FL-Next: Isoform 2 of RNA pseudourine synthase 3, mitochondrial OS=Arabidopsis thaliana GN=At1g78910 0.0
• Sma3: RNA-uridine isomerase 3 4.494e-10
C-terminus
sp_v3.0_unigene46173 SustainPine v3.0 482
• AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AA47_PICSI 0.0
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 1.905e-16
C-terminus
sp_v3.0_unigene47341 SustainPine v3.0 216
• AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AA47_PICSI 6.0e-28
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 2.436e-13
Internal
sp_v3.0_unigene58583 SustainPine v3.0 249
• AutoFact: putative ribosomal large subunit pseudouridine synthase C protein [Oryza sativa Japonica Group] dbj|BAD10435.1| putative ribosomal large subunit pseudouridine synthase C protein [Oryza sativa Japonica Group] 8.0e-25
• FL-Next: sp=RNA pseudourine synthase 3, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: RNA-uridine isomerase 3 1.777e-09
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain