Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA metabolic process

Term: GO:0006259  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene3145 SustainPine v3.0 2037
AutoFact: toprim domain-containing protein [Arabidopsis thaliana] gb|ACI49800.1| At1g30680 [Arabidopsis thaliana] gb|AEE31259.1| toprim domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Putative C-terminus
sp_v3.0_unigene3483 SustainPine v3.0 1023
AutoFact: Endonuclease n=1 Tax=Cucumis melo subsp. melo RepID=E5GCK8_CUCME 0.0
FL-Next: sp=Crossover junction endonuclease MUS81; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative N-terminus
sp_v3.0_unigene3764 SustainPine v3.0 2271
AutoFact: DNA repair protein recA-like 3 [Arabidopsis thaliana] sp|Q9ZUP2.2|RECA3_ARATH RecName: Full=DNA repair protein recA homolog 3, mitochondrial; AltName: Full=Recombinase A homolog 3; Flags: Precursor gb|ABM06015.1| At2g19490 [Arabidopsis thaliana] gb|AEC068 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA repair protein reca, putative 1.362e-11
Complete
sp_v3.0_unigene4074 SustainPine v3.0 857
AutoFact: DNA repair protein RAD51-like 4 [Arabidopsis thaliana] gb|AEE28174.1| DNA repair protein RAD51-like 4 [Arabidopsis thaliana] 1.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene5462 SustainPine v3.0 1439
AutoFact: peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] gb|AAL08294.1| AT4g17070/dl4565c [Arabidopsis thaliana] gb|AAN28830.1| At4g17070/dl4565c [Arabidopsis thaliana] gb|AEE83845.1| peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Complete
sp_v3.0_unigene6990 SustainPine v3.0 865
AutoFact: DNA repair endonuclease UVH1 [Arabidopsis thaliana] sp|Q9LKI5.2|XPF_ARATH RecName: Full=DNA repair endonuclease UVH1; AltName: Full=DNA excision repair protein XP-F homolog; AltName: Full=Ultraviolet hypersensitive 1; Short=AtRAD1 gb|AAF01274.1|AF160500_1 0.0
FL-Next: sp=DNA repair endonuclease UVH1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Ultraviolet hypersensitive 1 7.78e-09
C-terminus
sp_v3.0_unigene9905 SustainPine v3.0 669
AutoFact: double-strand break repair protein MRE11 [Arabidopsis thaliana] sp|Q9XGM2.1|MRE11_ARATH RecName: Full=Double-strand break repair protein MRE11 emb|CAB50793.1| Mre11 protein [Arabidopsis thaliana] dbj|BAB10749.1| DNA repair and meiosis protein Mre11 [Arabi 0.0
FL-Next: sp=Double-strand break repair protein MRE11; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Mre11 DNA repair/recombination protein 1.336e-12
Internal
sp_v3.0_unigene13581 SustainPine v3.0 646
AutoFact: toprim domain-containing protein [Arabidopsis thaliana] gb|ACI49800.1| At1g30680 [Arabidopsis thaliana] gb|AEE31259.1| toprim domain-containing protein [Arabidopsis thaliana] 6.0e-38
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene14701 SustainPine v3.0 1016
AutoFact: toprim domain-containing protein [Arabidopsis thaliana] gb|ACI49800.1| At1g30680 [Arabidopsis thaliana] gb|AEE31259.1| toprim domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene18696 SustainPine v3.0 1285
AutoFact: 26S proteasome regulatory subunit N1 [Arabidopsis thaliana] sp|Q9SIV2.2|RPN1A_ARATH RecName: Full=26S proteasome non-ATPase regulatory subunit 2 1A; AltName: Full=26S proteasome regulatory subunit RPN1 A; Short=AtRPN1a; AltName: Full=26S proteasome regula 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative 26S proteasome regulatory subunit S2 1.932e-12
C-terminus
sp_v3.0_unigene20455 SustainPine v3.0 837
AutoFact: 26S proteasome regulatory subunit N1 [Arabidopsis thaliana] sp|Q9SIV2.2|RPN1A_ARATH RecName: Full=26S proteasome non-ATPase regulatory subunit 2 1A; AltName: Full=26S proteasome regulatory subunit RPN1 A; Short=AtRPN1a; AltName: Full=26S proteasome regula 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative 26S proteasome regulatory subunit S2 2.195e-12
N-terminus
sp_v3.0_unigene24521 SustainPine v3.0 524
AutoFact: PREDICTED: similar to DNA repair protein RAD51 homolog A n=1 Tax=Hydra magnipapillata RepID=UPI0001923F2B 0.0
FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: Meiotic recombination protein DMC1 homolog 6.709e-12
Internal
sp_v3.0_unigene29173 SustainPine v3.0 732
AutoFact: ultraviolet hypersensitive 1 [Arabidopsis thaliana] 0.0
FL-Next: Isoform 2 of DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 0.0
Sma3: Ultraviolet hypersensitive 1 2.783e-09
N-terminus
sp_v3.0_unigene37139 SustainPine v3.0 1233
AutoFact: DNA repair protein recA-like 1 [Arabidopsis thaliana] sp|Q39199.1|RECAC_ARATH RecName: Full=DNA repair protein recA homolog 1, chloroplastic; AltName: Full=Recombinase A homolog 1; Flags: Precursor gb|AAA61781.1| chloroplast DNA repair protein precursor [ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RecA DNA recombinase 2.754e-08
Putative C-terminus
sp_v3.0_unigene38987 SustainPine v3.0 521
AutoFact: essential meiotic endonuclease 1A [Arabidopsis thaliana] gb|AAP21264.1| At2g21800 [Arabidopsis thaliana] dbj|BAE99972.1| hypothetical protein [Arabidopsis thaliana] gb|AEC07223.1| essential meiotic endonuclease 1A [Arabidopsis thaliana] 8.00141e-43
FL-Next: sp=Crossover junction endonuclease EME1; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene39508 SustainPine v3.0 1708
AutoFact: endonuclease [Arabidopsis thaliana] 0.0
FL-Next: sp=Crossover junction endonuclease MUS81; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene40266 SustainPine v3.0 400
AutoFact: RecA bacterial DNA recombination protein [Medicago truncatula] 3.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA repair protein radA (RadA)-like 2.399e-09
Internal
sp_v3.0_unigene40817 SustainPine v3.0 273
AutoFact: essential meiotic endonuclease 1A [Arabidopsis thaliana] gb|AAP21264.1| At2g21800 [Arabidopsis thaliana] dbj|BAE99972.1| hypothetical protein [Arabidopsis thaliana] gb|AEC07223.1| essential meiotic endonuclease 1A [Arabidopsis thaliana] 4.0e-19
FL-Next: sp=Crossover junction endonuclease EME1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Putative uncharacterized protein At2g21800 4.916e-10
Putative C-terminus
sp_v3.0_unigene41927 SustainPine v3.0 221
AutoFact: DNA repair protein RAD51-like 4 [Arabidopsis thaliana] gb|AEE28174.1| DNA repair protein RAD51-like 4 [Arabidopsis thaliana] 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene43700 SustainPine v3.0 930
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain