Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA metabolic process

Term: GO:0006259  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene105224 SustainPine v3.0 144
AutoFact: 5' repair endonuclease [Arabidopsis thaliana] 1.0e-08
FL-Next: Isoform 3 of DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 0.0
Internal
sp_v3.0_unigene105557 SustainPine v3.0 463
AutoFact: Os08g0156900 protein n=4 Tax=Oryza sativa RepID=Q6ZD95_ORYSJ 0.0
FL-Next: sp=Meiotic recombination protein SPO11-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative SPO11 protein 2.258e-09
Internal
sp_v3.0_unigene108941 SustainPine v3.0 247
AutoFact: essential meiotic endonuclease 1A [Arabidopsis thaliana] gb|AAP21264.1| At2g21800 [Arabidopsis thaliana] dbj|BAE99972.1| hypothetical protein [Arabidopsis thaliana] gb|AEC07223.1| essential meiotic endonuclease 1A [Arabidopsis thaliana] 7.0e-15
FL-Next: sp=Crossover junction endonuclease EME1B; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative uncharacterized protein At2g21800 4.916e-10
Internal
sp_v3.0_unigene112870 SustainPine v3.0 595
AutoFact: essential meiotic endonuclease 1A [Arabidopsis thaliana] gb|AAP21264.1| At2g21800 [Arabidopsis thaliana] dbj|BAE99972.1| hypothetical protein [Arabidopsis thaliana] gb|AEC07223.1| essential meiotic endonuclease 1A [Arabidopsis thaliana] 0.0
FL-Next: sp=Crossover junction endonuclease EME1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Putative uncharacterized protein At2g21800 5.358e-10
Internal
sp_v3.0_unigene113115 SustainPine v3.0 442
AutoFact: Meiotic recombination protein SPO11-1 n=2 Tax=Arabidopsis RepID=SPO11_ARATH 0.0
FL-Next: sp=Meiotic recombination protein SPO11-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene115068 SustainPine v3.0 228
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene115143 SustainPine v3.0 337
AutoFact: endonuclease [Arabidopsis thaliana] 6.0e-23
FL-Next: sp=Crossover junction endonuclease MUS81; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene116733 SustainPine v3.0 367
AutoFact: RecA bacterial DNA recombination protein [Medicago truncatula] 6.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene122593 SustainPine v3.0 447
AutoFact: Double-strand break repair protein MRE11 n=2 Tax=Arabidopsis RepID=MRE11_ARATH 2.0e-36
FL-Next: sp=Double-strand break repair protein MRE11; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Double-strand break repair protein MRE11 6.663e-09
N-terminus
sp_v3.0_unigene123041 SustainPine v3.0 518
AutoFact: endonuclease [Arabidopsis thaliana] 1.0e-15
FL-Next: sp=Crossover junction endonuclease MUS81; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene124460 SustainPine v3.0 265
AutoFact: 5' repair endonuclease [Arabidopsis thaliana] 9.0e-27
FL-Next: sp=DNA repair endonuclease UVH1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Ultraviolet hypersensitive 1 3.343e-09
Internal
sp_v3.0_unigene126583 SustainPine v3.0 699
AutoFact: DNA repair protein recA-like 3 [Arabidopsis thaliana] sp|Q9ZUP2.2|RECA3_ARATH RecName: Full=DNA repair protein recA homolog 3, mitochondrial; AltName: Full=Recombinase A homolog 3; Flags: Precursor gb|ABM06015.1| At2g19490 [Arabidopsis thaliana] gb|AEC068 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA repair protein reca, putative 1.362e-11
Internal
sp_v3.0_unigene149342 SustainPine v3.0 110
AutoFact: 5' repair endonuclease [Arabidopsis thaliana] 1.0e-06
FL-Next: Isoform 2 of DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 0.0
Internal
sp_v3.0_unigene150122 SustainPine v3.0 448
AutoFact: 26S proteasome regulatory subunit S2 n=1 Tax=Polysphondylium pallidum RepID=D3B684_POLPA 9.80909e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative 26S proteasome regulatory subunit S2 1.691e-12
Putative C-terminus
sp_v3.0_unigene151764 SustainPine v3.0 453
AutoFact: Protein RecA n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KI12_9GAMM 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA repair protein reca, putative 1.233e-11
Internal
sp_v3.0_unigene156027 SustainPine v3.0 258
AutoFact: DNA repair protein RAD51 homolog 1 n=16 Tax=Amniota RepID=RAD51_MOUSE 1.0e-30
FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: Meiotic recombination protein DMC1 homolog 1.491e-11
Internal
sp_v3.0_unigene156646 SustainPine v3.0 309
AutoFact: 26S proteasome regulatory subunit S2 1B [Arabidopsis thaliana] sp|Q6XJG8.1|RPN1B_ARATH RecName: Full=26S proteasome non-ATPase regulatory subunit 2 1B; AltName: Full=26S proteasome regulatory subunit RPN1 B; Short=AtRPN1b; AltName: Full=26S proteasome reg 2.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative 26S proteasome regulatory subunit S2 7.414e-13
Internal
sp_v3.0_unigene157049 SustainPine v3.0 418
AutoFact: PREDICTED: similar to RAD51 homolog isoform 1 n=1 Tax=Ciona intestinalis RepID=UPI000180BB1E 0.0
FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: Meiotic recombination protein DMC1 homolog 7.079e-12
Internal
sp_v3.0_unigene157259 SustainPine v3.0 348
AutoFact: putative 26S proteasome regulatory subunit S2 [Oryza sativa Japonica Group] 1.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative 26S proteasome regulatory subunit S2 1.691e-12
Putative C-terminus
sp_v3.0_unigene157320 SustainPine v3.0 324
AutoFact: PREDICTED: proteasome 26S non-ATPase subunit 2-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CB970C 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative 26S proteasome regulatory subunit S2 1.626e-12
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain