Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA metabolic process

Term: GO:0006259  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene51359 SustainPine v3.0 301
AutoFact: 5' repair endonuclease [Arabidopsis thaliana] 1.0e-28
FL-Next: Isoform 3 of DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 0.0
Sma3: Ultraviolet hypersensitive 1 2.608e-09
Internal
sp_v3.0_unigene54134 SustainPine v3.0 357
AutoFact: DNA repair protein RAD51-like 2 [Arabidopsis thaliana] gb|AEC08140.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana] 1.0e-21
FL-Next: sp=DNA repair protein RAD51 homolog 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene55751 SustainPine v3.0 241
AutoFact: 26S proteasome regulatory subunit S2 1B [Arabidopsis thaliana] sp|Q6XJG8.1|RPN1B_ARATH RecName: Full=26S proteasome non-ATPase regulatory subunit 2 1B; AltName: Full=26S proteasome regulatory subunit RPN1 B; Short=AtRPN1b; AltName: Full=26S proteasome reg 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative 26S proteasome regulatory subunit S2 1.065e-12
Internal
sp_v3.0_unigene64704 SustainPine v3.0 259
AutoFact: DNA repair protein reca, putative n=1 Tax=Ricinus communis RepID=B9RK79_RICCO 3.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene67374 SustainPine v3.0 237
AutoFact: DNA repair protein radA (radA)-like [Oryza sativa Japonica Group] dbj|BAD45123.1| DNA repair protein radA (radA)-like [Oryza sativa Japonica Group] dbj|BAG91035.1| unnamed protein product [Oryza sativa Japonica Group] 1.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RAD51C protein 3.006e-09
Internal
sp_v3.0_unigene67725 SustainPine v3.0 286
AutoFact: 26S proteasome regulatory subunit N1 [Arabidopsis thaliana] sp|Q9SIV2.2|RPN1A_ARATH RecName: Full=26S proteasome non-ATPase regulatory subunit 2 1A; AltName: Full=26S proteasome regulatory subunit RPN1 A; Short=AtRPN1a; AltName: Full=26S proteasome regula 2.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative 26S proteasome regulatory subunit S2 2.08e-12
Internal
sp_v3.0_unigene67971 SustainPine v3.0 206
AutoFact: DNA repair protein rad51, putative n=1 Tax=Ricinus communis RepID=B9RR28_RICCO 2.0e-18
FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: Rad51 DNA recombinase 1 1.208e-08
Putative C-terminus
sp_v3.0_unigene68692 SustainPine v3.0 163
AutoFact: rad1; RAD1 DNA repair protein homolog; K10848 DNA excision repair protein ERCC-4 [EC:3.1.-.-] 5.0e-15
FL-Next: sp=DNA repair endonuclease UVH1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Ultraviolet hypersensitive 1 3.849e-09
Internal
sp_v3.0_unigene68699 SustainPine v3.0 236
AutoFact: Meiotic recombination protein DMC1 homolog n=1 Tax=Glycine max RepID=DMC1_SOYBN 3.0e-20
FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: Meiotic recombination protein DMC1 homolog 3.125e-12
C-terminus
sp_v3.0_unigene70764 SustainPine v3.0 251
AutoFact: DNA repair and recombination protein radA, putative n=1 Tax=Ricinus communis RepID=B9RDA0_RICCO 4.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene71361 SustainPine v3.0 280
AutoFact: [L] COG1948 ERCC4-type nuclease 9.0e-09
FL-Next: sp=DNA repair endonuclease UVH1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Ultraviolet hypersensitive 1 5.087e-09
Internal
sp_v3.0_unigene71901 SustainPine v3.0 223
AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9SAY6_RICCO 2.0e-20
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene73046 SustainPine v3.0 276
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Sma3: Ultraviolet hypersensitive 1 3.151e-09
C-terminus
sp_v3.0_unigene73177 SustainPine v3.0 210
AutoFact: putative 26S proteasome regulatory subunit S2 [Arabidopsis thaliana] 2.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative 26S proteasome regulatory subunit S2 1.691e-12
Internal
sp_v3.0_unigene94848 SustainPine v3.0 762
AutoFact: toprim domain-containing protein [Arabidopsis thaliana] gb|ACI49800.1| At1g30680 [Arabidopsis thaliana] gb|AEE31259.1| toprim domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene96223 SustainPine v3.0 240
AutoFact: Ultraviolet hypersensitive 1 n=1 Tax=Arabidopsis thaliana RepID=A5JEM6_ARATH 5.0e-18
FL-Next: Isoform 2 of DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 0.0
Sma3: Ultraviolet hypersensitive 1 8.978e-10
Internal
sp_v3.0_unigene99949 SustainPine v3.0 877
AutoFact: RAD51 homolog [Populus nigra] 0.0
FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: Meiotic recombination protein DMC1 homolog 7.576e-12
C-terminus
sp_v3.0_unigene100900 SustainPine v3.0 257
AutoFact: [L] COG0468 RecA/RadA recombinase 1.0e-09
FL-Next: sp=DNA repair protein recA homolog 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene102960 SustainPine v3.0 721
AutoFact: meiotic recombination protein SPO11-2 [Arabidopsis thaliana] sp|Q9M4A1.1|SPO12_ARATH RecName: Full=Meiotic recombination protein SPO11-2; Short=AtSPO11-2 emb|CAB81545.1| putative topoisomerase VIA [Arabidopsis thaliana] gb|ABE65738.1| DNA topoisomerase VI 0.0
FL-Next: sp=Meiotic recombination protein SPO11-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative SPO11 protein 2.121e-09
N-terminus
sp_v3.0_unigene104798 SustainPine v3.0 464
AutoFact: DNA repair and recombination protein radB, putative n=1 Tax=Ricinus communis RepID=B9SYN5_RICCO 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain