Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: cytosolic small ribosomal subunit

Term: GO:0022627  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene143648 SustainPine v3.0 252
• AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 4.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 7.05e-17
Internal
sp_v3.0_unigene143795 SustainPine v3.0 422
• AutoFact: 40S ribosomal protein S30 [Arabidopsis thaliana] ref|NP_200478.1| 40S ribosomal protein S30 [Arabidopsis thaliana] ref|NP_565458.1| 40S ribosomal protein S30 [Arabidopsis thaliana] ref|XP_002866160.1| 40S ribosomal protein S30 [Arabidopsis lyrata subsp. l 2.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein S30 9.011e-13
Putative Complete
sp_v3.0_unigene144097 SustainPine v3.0 256
• AutoFact: 40S ribosomal protein S2 n=1 Tax=Picea abies RepID=Q9AVU0_PICAB 3.0e-22
• FL-Next: tr=40S ribosomal protein S2; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: 40S ribosomal protein S2 3.659e-15
Putative C-terminus
sp_v3.0_unigene144141 SustainPine v3.0 404
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 3.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.75201e-41
Putative C-terminus
sp_v3.0_unigene144204 SustainPine v3.0 569
• AutoFact: 40S ribosomal protein S8 n=4 Tax=Picea sitchensis RepID=A9NNT7_PICSI 2.0e-40
• FL-Next: sp=40S ribosomal protein S8; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein S8 0.0
N-terminus
sp_v3.0_unigene144211 SustainPine v3.0 662
• AutoFact: Chain B, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome gb|AAM92710.1| putative 40S ribosomal protein S3 [Triticum aestivum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3 1.218e-10
Complete
sp_v3.0_unigene144244 SustainPine v3.0 632
• AutoFact: 40S ribosomal protein S4-3 [Arabidopsis thaliana] sp|Q8VYK6.2|RS43_ARATH RecName: Full=40S ribosomal protein S4-3 gb|AAL16117.1|AF428285_1 AT5g58420/mqj2_10 [Arabidopsis thaliana] gb|AAM64284.1| ribosomal protein S4-like [Arabidopsis thaliana] gb|AED97051 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 4.052e-24
C-terminus
sp_v3.0_unigene144375 SustainPine v3.0 419
• AutoFact: RecName: Full=40S ribosomal protein S23; AltName: Full=S12 gb|AAA79921.1| putative 40S ribosomal protein s12 [Fragaria x ananassa] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S23 2.129e-10
Putative Complete
sp_v3.0_unigene144500 SustainPine v3.0 489
• AutoFact: Translationally-controlled tumor protein homolog n=4 Tax=Pinaceae RepID=TCTP_PSEMZ 9.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Translationally-controlled tumor protein homolog 0.0
Putative N-terminus
sp_v3.0_unigene144598 SustainPine v3.0 847
• AutoFact: PREDICTED: 40S ribosomal protein S3-like n=1 Tax=Pongo abelii RepID=UPI0001D5E2D3 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3, putative 2.319e-08
Complete
sp_v3.0_unigene144772 SustainPine v3.0 1137
• AutoFact: 40S ribosomal protein S7-like protein [Solanum tuberosum] gb|ABA46775.1| unknown [Solanum tuberosum] gb|ABB17004.1| ribosomal protein S7-like protein [Solanum tuberosum] gb|ABB87101.1| 40S ribosomal protein S7-like protein-like [Solanum tuberosum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S7 8.406e-26
Complete
sp_v3.0_unigene144778 SustainPine v3.0 602
• AutoFact: ribosomal protein L17-1 [Poa secunda] 4.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S29 2.935e-20
Complete
sp_v3.0_unigene145052 SustainPine v3.0 317
• AutoFact: Ribosomal protein S18-like n=1 Tax=Oryza sativa Japonica Group RepID=Q8H583_ORYSJ 9.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 7.209e-12
N-terminus
sp_v3.0_unigene145113 SustainPine v3.0 264
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 6.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.66247e-44
Putative C-terminus
sp_v3.0_unigene145176 SustainPine v3.0 242
• AutoFact: 40S ribosomal protein S15a n=1 Tax=Phytophthora infestans T30-4 RepID=D0NUU4_PHYIT 2.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene145335 SustainPine v3.0 559
• AutoFact: 40S ribosomal protein S12 n=4 Tax=Picea sitchensis RepID=A9NQ79_PICSI 0.0
• FL-Next: sp=40S ribosomal protein S12; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S12 0.0
Complete
sp_v3.0_unigene145342 SustainPine v3.0 344
• AutoFact: Ribosomal protein S27 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SLV7_PHYPA 2.0e-22
• FL-Next: sp=40S ribosomal protein S27; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein S27 2.073e-26
Putative Complete
sp_v3.0_unigene145345 SustainPine v3.0 432
• AutoFact: 40S ribosomal protein S15a-1 [Arabidopsis thaliana] ref|NP_200793.1| 40S ribosomal protein S15a-1 [Arabidopsis thaliana] ref|NP_973783.1| 40S ribosomal protein S15a-1 [Arabidopsis thaliana] ref|XP_002866354.1| RPS15A [Arabidopsis lyrata subsp. lyrata] ref 2.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 30S ribosomal protein S8, putative 2.173e-08
N-terminus
sp_v3.0_unigene145357 SustainPine v3.0 663
• AutoFact: ribosomal S29 subunit [Arabidopsis thaliana] dbj|BAD43582.1| ribosomal S29 subunit [Arabidopsis thaliana] dbj|BAD43833.1| ribosomal S29 subunit [Arabidopsis thaliana] 7.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S29 1.393e-19
Complete
sp_v3.0_unigene145637 SustainPine v3.0 812
• AutoFact: 40S ribosomal protein S21 n=2 Tax=Picea sitchensis RepID=A9NJY4_PICSI 3.0e-34
• FL-Next: sp=40S ribosomal protein S21; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S21 1.449e-14
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain