Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: cytosolic small ribosomal subunit

Term: GO:0022627  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene129455 SustainPine v3.0 499
• AutoFact: 40S ribosomal protein S13, putative n=1 Tax=Ricinus communis RepID=B9R9P3_RICCO 7.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S13 1.495e-14
N-terminus
sp_v3.0_unigene131358 SustainPine v3.0 402
• AutoFact: 40S ribosomal protein S14 [Oryza sativa Indica Group] 2.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S14 4.355e-24
Putative N-terminus
sp_v3.0_unigene131370 SustainPine v3.0 286
• AutoFact: 40S ribosomal protein S5-1 n=4 Tax=Arabidopsis RepID=RS51_ARATH 7.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S5 4.62e-21
N-terminus
sp_v3.0_unigene131641 SustainPine v3.0 484
• AutoFact: 40S ribosomal protein S2 n=11 Tax=Endopterygota RepID=E2ACC9_9HYME 2.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S2 3.936e-11
N-terminus
sp_v3.0_unigene132889 SustainPine v3.0 228
• AutoFact: Ubiquitin [Medicago truncatula] 9.0e-20
• FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Putative N-terminus
sp_v3.0_unigene132940 SustainPine v3.0 235
• AutoFact: ribosomal S3a [Musa acuminata] 5.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3a 5.872e-21
C-terminus
sp_v3.0_unigene132973 SustainPine v3.0 409
• AutoFact: cytoplasmic ribosomal protein S14 [Brassica napus] 2.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S14 1.524e-24
Putative Complete
sp_v3.0_unigene133599 SustainPine v3.0 284
• AutoFact: cytoplasmic ribosomal protein S14 [Brassica napus] 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S14 3.92e-24
N-terminus
sp_v3.0_unigene136081 SustainPine v3.0 310
• AutoFact: 40S ribosomal protein S13, putative n=1 Tax=Solanum demissum RepID=Q6L4B2_SOLDE 5.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S13 3.733e-18
N-terminus
sp_v3.0_unigene140444 SustainPine v3.0 699
• AutoFact: 40S ribosomal protein S18 [Arabidopsis thaliana] ref|NP_192718.1| 40S ribosomal protein S18 [Arabidopsis thaliana] ref|NP_564434.1| 40S ribosomal protein S18 [Arabidopsis thaliana] ref|XP_002872461.1| hypothetical protein ARALYDRAFT_489832 [Arabidopsis ly 8.99999e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 8.064e-12
Complete
sp_v3.0_unigene140480 SustainPine v3.0 690
• AutoFact: Putative 40S Ribosomal protein [Oryza sativa Japonica Group] gb|ABF94325.1| 40S ribosomal protein SA, putative, expressed [Oryza sativa Japonica Group] gb|EAZ25828.1| hypothetical protein OsJ_09668 [Oryza sativa Japonica Group] gb|ACJ54906.1| 40S ribosoma 4.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein SA 8.518e-25
Misassembled
sp_v3.0_unigene140591 SustainPine v3.0 850
• AutoFact: 40S ribosomal protein SA n=1 Tax=Glycine max RepID=RSSA_SOYBN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein SA 2.883e-36
C-terminus
sp_v3.0_unigene141765 SustainPine v3.0 326
• AutoFact: 40S ribosomal protein S8 n=4 Tax=Picea sitchensis RepID=A9NNT7_PICSI 3.0e-20
• FL-Next: sp=40S ribosomal protein S8; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein S8 8.14995e-41
Internal
sp_v3.0_unigene141876 SustainPine v3.0 516
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 5.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.11302e-41
Putative C-terminus
sp_v3.0_unigene142766 SustainPine v3.0 316
• AutoFact: RecName: Full=40S ribosomal protein S23; AltName: Full=S12 gb|AAA79921.1| putative 40S ribosomal protein s12 [Fragaria x ananassa] 3.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S23 4.785e-14
N-terminus
sp_v3.0_unigene142769 SustainPine v3.0 408
• AutoFact: Thioredoxin H-type n=5 Tax=Picea RepID=TRXH_PICMA 6.0e-11
• FL-Next: sp=Thioredoxin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S14 4.621e-12
Putative C-terminus
sp_v3.0_unigene142830 SustainPine v3.0 294
• AutoFact: 40S ribosomal protein S14 [Oryza sativa Indica Group] 2.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S14 3.92e-24
Putative N-terminus
sp_v3.0_unigene142933 SustainPine v3.0 194
• AutoFact: 40S ribosomal protein S3-1 [Arabidopsis thaliana] sp|Q9SIP7.1|RS31_ARATH RecName: Full=40S ribosomal protein S3-1 gb|AAK55690.1|AF378887_1 At2g31610/T9H9.13 [Arabidopsis thaliana] gb|AAD24852.1| 40S ribosomal protein; contains C-terminal domain [Arabidops 7.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3, putative 1.674e-08
N-terminus
sp_v3.0_unigene142956 SustainPine v3.0 536
• AutoFact: 40S ribosomal protein SA n=2 Tax=Vitis vinifera RepID=RSSA_VITVI 5.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein SA 2.883e-36
Internal
sp_v3.0_unigene142958 SustainPine v3.0 247
• AutoFact: Ribosomal s6 RPS6-2 family protein (Fragment) n=12 Tax=Musaceae RepID=D9I804_MUSAC 2.0e-17
• FL-Next: sp=40S ribosomal protein S6; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein S6 9.654e-08
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain