Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: condensed nuclear chromosome

Term: GO:0000794  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene2615 SustainPine v3.0 2903
AutoFact: cullin-like protein1 [Pisum sativum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cullin-1, putative 2.754e-08
Complete
sp_v3.0_unigene3483 SustainPine v3.0 1023
AutoFact: Endonuclease n=1 Tax=Cucumis melo subsp. melo RepID=E5GCK8_CUCME 0.0
FL-Next: sp=Crossover junction endonuclease MUS81; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative N-terminus
sp_v3.0_unigene8134 SustainPine v3.0 2930
AutoFact: cullin-like protein1 [Pisum sativum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cullin-1, putative 2.754e-08
Complete
sp_v3.0_unigene16636 SustainPine v3.0 1702
AutoFact: cullin 3 [Arabidopsis thaliana] sp|Q9ZVH4.1|CUL3A_ARATH RecName: Full=Cullin-3A; Short=AtCUL3a gb|AAF87034.1|AC006535_12 T24P13.25 [Arabidopsis thaliana] gb|AAD14503.1| Highly similar to cullin 3 [Arabidopsis thaliana] emb|CAC87120.1| cullin 3a [Arabidops 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cullin 4.85e-21
C-terminus
sp_v3.0_unigene18980 SustainPine v3.0 475
AutoFact: [O] COG5647 Cullin, a subunit of E3 ubiquitin ligase 7.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative cullin 8.379e-08
Internal
sp_v3.0_unigene31733 SustainPine v3.0 786
AutoFact: Putative cullin [Oryza sativa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative cullin 9.374e-08
N-terminus
sp_v3.0_unigene37177 SustainPine v3.0 274
AutoFact: cullin 1A [Nicotiana tabacum] 4.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative cullin 6.254e-08
Internal
sp_v3.0_unigene39480 SustainPine v3.0 212
AutoFact: CUL1 n=9 Tax=Poaceae RepID=Q5ZC88_ORYSJ 3.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene39508 SustainPine v3.0 1708
AutoFact: endonuclease [Arabidopsis thaliana] 0.0
FL-Next: sp=Crossover junction endonuclease MUS81; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene40310 SustainPine v3.0 132
AutoFact: cullin 1A [Nicotiana tabacum] 3.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene49191 SustainPine v3.0 304
AutoFact: cullin-like protein [Oryza sativa Japonica Group] gb|AAQ01196.1| CUL1 [Oryza sativa Japonica Group] 5.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene50691 SustainPine v3.0 208
AutoFact: cullin 1C [Nicotiana tabacum] 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative cullin 6.495e-08
Internal
sp_v3.0_unigene56162 SustainPine v3.0 381
AutoFact: Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9T5R6_PHYPA 2.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene64033 SustainPine v3.0 213
AutoFact: DNA mismatch repair protein MSH4 [Arabidopsis thaliana] gb|AEE83882.1| DNA mismatch repair protein MSH4 [Arabidopsis thaliana] 2.0e-12
FL-Next: sp=DNA mismatch repair protein MSH4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene65427 SustainPine v3.0 246
AutoFact: Cullin-like protein n=2 Tax=Oryza sativa RepID=Q93VL5_ORYSJ 0.0001
FL-Next: tr=Putative uncharacterized protein Sb03g015010; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Internal
sp_v3.0_unigene67865 SustainPine v3.0 155
AutoFact: Plastid CUL1 n=1 Tax=Hevea brasiliensis RepID=D8V3L8_HEVBR 4.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene69302 SustainPine v3.0 149
AutoFact: cullin 1C [Nicotiana tabacum] 1.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative cullin 5.558e-08
Internal
sp_v3.0_unigene70063 SustainPine v3.0 299
AutoFact: CUL1 n=9 Tax=Poaceae RepID=Q5ZC88_ORYSJ 5.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene75434 SustainPine v3.0 265
AutoFact: cullin-like protein [Oryza sativa Japonica Group] gb|AAQ01196.1| CUL1 [Oryza sativa Japonica Group] 9.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene115143 SustainPine v3.0 337
AutoFact: endonuclease [Arabidopsis thaliana] 6.0e-23
FL-Next: sp=Crossover junction endonuclease MUS81; Oryza sativa subsp. japonica (Rice). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain