Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: transcription from RNA polymerase II promoter

Term: GO:0006366  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene85291 SustainPine v3.0 323
AutoFact: Herpes_BLLF1 multi-domain protein 6.0e-09
Sma3: DNA-directed RNA polymerase 6.813e-20
coding
sp_v3.0_unigene85910 SustainPine v3.0 233
AutoFact: DUF605 multi-domain protein 2.0e-06
Sma3: DNA-directed RNA polymerase 1.97e-19
coding
sp_v3.0_unigene86121 SustainPine v3.0 334
AutoFact: DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=Q0DKN9_ORYSJ 0.0001
coding
sp_v3.0_unigene96158 SustainPine v3.0 416
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=Q2TUM9_9CONI 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta''; Agathis australis (Kauri) (Dammara australis). Plastid; Chloroplast. 0.0
Sma3: DNA-directed RNA polymerase 5.497e-32
Internal
sp_v3.0_unigene114847 SustainPine v3.0 380
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TI03_VITVI 2.0e-39
FL-Next: sp=DNA-directed RNA polymerase; Pinus taiwanensis. Plastid; Chloroplast. 0.0
Sma3: DNA-directed RNA polymerase 1.032e-34
Internal
sp_v3.0_unigene118670 SustainPine v3.0 335
AutoFact: DNA-directed RNA polymerase n=6 Tax=core eudicotyledons RepID=B9SXC0_RICCO 3.0e-24
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 4.865e-17
Internal
sp_v3.0_unigene128420 SustainPine v3.0 384
AutoFact: PREDICTED: similar to cAMP response element-binding protein 5 n=1 Tax=Hydra magnipapillata RepID=UPI0001925AA1 2.0e-07
Sma3: DNA-directed RNA polymerase 5.695e-18
coding
sp_v3.0_unigene129006 SustainPine v3.0 444
AutoFact: transcription initiation factor TFIID subunit D11 [Arabidopsis thaliana] gb|AAQ65105.1| At1g02680 [Arabidopsis thaliana] gb|AAR28017.1| TAF13 [Arabidopsis thaliana] dbj|BAD43669.1| putative transcription factor TFIID [Arabidopsis thaliana] dbj|BAD43729.1| 2.0e-05
FL-Next: tr=Transcription initiation factor TFIID subunit; Jatropha curcas. 0.0
N-terminus
sp_v3.0_unigene129484 SustainPine v3.0 449
AutoFact: DUF1421 multi-domain protein 7.0e-09
Sma3: DNA-directed RNA polymerase 4.786e-19
unknown
sp_v3.0_unigene139592 SustainPine v3.0 350
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=E0CQW1_VITVI 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 0.0
Internal
sp_v3.0_unigene141255 SustainPine v3.0 348
AutoFact: DNA-directed RNA polymerase n=3 Tax=Magnoliophyta RepID=B9FZ51_ORYSJ 2.0e-27
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 5.553e-12
Internal
sp_v3.0_unigene148289 SustainPine v3.0 377
AutoFact: DNA-directed RNA polymerase n=6 Tax=core eudicotyledons RepID=B9SXC0_RICCO 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 9.526e-27
Internal
sp_v3.0_unigene148862 SustainPine v3.0 568
AutoFact: DNA-directed RNA polymerase n=3 Tax=Tracheophyta RepID=D8SYZ7_SELML 1.0e-26
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene150502 SustainPine v3.0 394
AutoFact: Cuticle_3 multi-domain protein 1.0e-07
FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
Putative Complete
sp_v3.0_unigene154280 SustainPine v3.0 537
AutoFact: Transcription initiation factor TFIID subunit 13 n=2 Tax=Dictyostelium RepID=TAF13_DICDI 8.0e-28
FL-Next: tr=Transcription initiation factor IID 18 kDa subunit (TAFII-18) family protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Complete
sp_v3.0_unigene162932 SustainPine v3.0 333
AutoFact: DNA-directed RNA polymerase n=2 Tax=Selaginella moellendorffii RepID=D8SQN3_SELML 1.4013e-45
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 2.96e-18
Internal
sp_v3.0_unigene163706 SustainPine v3.0 328
AutoFact: DNA-directed RNA polymerase (Fragment) n=10 Tax=Spermatophyta RepID=Q2TUN6_GINBI 6.0e-17
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 4.948e-18
Internal
sp_v3.0_unigene168179 SustainPine v3.0 295
AutoFact: DNA-directed RNA polymerase (Fragment) n=10 Tax=Spermatophyta RepID=Q2TUN6_GINBI 2.0e-32
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: RNA polymerase II largest subunit 6.855e-36
Internal
sp_v3.0_unigene171344 SustainPine v3.0 405
AutoFact: Amelogenin multi-domain protein 2.0e-13
coding
sp_v3.0_unigene173563 SustainPine v3.0 343
AutoFact: Cell wall-anchored protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B873_9BACI 2.0e-06
Sma3: DNA-directed RNA polymerase 1.046e-11
coding

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain