Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: regulation of seed germination

Term: GO:0010029  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene57052 SustainPine v3.0 279
AutoFact: Phytochrome P (Fragment) n=3 Tax=Strobus RepID=B8XQ15_PINPE 1.0e-23
FL-Next: sp=Phytochrome; Pinus sylvestris (Scots pine). 0.0
Sma3: Phytochrome D 6.791e-35
Internal
sp_v3.0_unigene60203 SustainPine v3.0 166
AutoFact: Cytokinin receptor 1 n=1 Tax=Physcomitrella patens RepID=Q27PX4_9BRYO 2.0e-17
FL-Next: sp=Histidine kinase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histidine kinase 1.301e-28
Internal
sp_v3.0_unigene74518 SustainPine v3.0 249
AutoFact: Serine/threonine-protein kinase SAPK6 n=11 Tax=Poaceae RepID=SAPK6_ORYSJ 5.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein kinase 1.669e-07
Internal
sp_v3.0_unigene75179 SustainPine v3.0 366
AutoFact: Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TWK2_PHYPA 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transcription factor, putative 1.913e-15
N-terminus
sp_v3.0_unigene77395 SustainPine v3.0 503
AutoFact: Serine/threonine-protein kinase SAPK10, putative n=1 Tax=Ricinus communis RepID=B9S8L1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Snf1-like ser/thr protein kinase 5.542e-07
N-terminus
sp_v3.0_unigene79436 SustainPine v3.0 278
AutoFact: Protein kinase n=1 Tax=Craterostigma plantagineum RepID=O65765_CRAPL 4.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein kinase 3.252e-07
Putative N-terminus
sp_v3.0_unigene79808 SustainPine v3.0 265
AutoFact: Protein kinase n=1 Tax=Craterostigma plantagineum RepID=O65765_CRAPL 4.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein kinase 3.252e-07
Putative N-terminus
sp_v3.0_unigene79962 SustainPine v3.0 189
AutoFact: serine/threonine-protein kinase SRK2A [Arabidopsis thaliana] sp|P43291.1|SRK2A_ARATH RecName: Full=Serine/threonine-protein kinase SRK2A; AltName: Full=Arabidopsis protein SK1; AltName: Full=OST1-kinase-like 7; AltName: Full=SNF1-related kinase 2.4; Short 3.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/threonine-protein kinase SAPK7 3.696e-07
Internal
sp_v3.0_unigene95587 SustainPine v3.0 676
AutoFact: transcription factor TCP9 [Arabidopsis thaliana] sp|O64647.1|TCP9_ARATH RecName: Full=Transcription factor TCP9 gb|AAK43925.1|AF370606_1 putative PCF2-like DNA binding protein [Arabidopsis thaliana] gb|AAC06168.1| putative PCF2-like DNA binding protein [A 1.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transcription factor, putative 2.403e-15
Putative N-terminus
sp_v3.0_unigene99474 SustainPine v3.0 949
AutoFact: Phytochrome n=12 Tax=Pinaceae RepID=PHY_PICAB 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome A 1.189e-17
Putative C-terminus
sp_v3.0_unigene101258 SustainPine v3.0 557
AutoFact: Phytochrome N (Fragment) n=12 Tax=Pinaceae RepID=Q9FSD5_PINSY 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome 2.305e-15
Internal
sp_v3.0_unigene103790 SustainPine v3.0 303
AutoFact: TPA: histidine kinase [Oryza sativa Japonica Group] 2.0e-32
FL-Next: sp=Histidine kinase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histidine kinase 9.28e-32
Internal
sp_v3.0_unigene104993 SustainPine v3.0 409
AutoFact: Histidine kinase 1, 2, 3 plant, putative n=1 Tax=Ricinus communis RepID=B9T0D3_RICCO 5.99756e-43
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histidine kinase 3.8e-31
Internal
sp_v3.0_unigene105177 SustainPine v3.0 223
AutoFact: Cytokinin receptor AtAHK4-like protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TKN3_PHYPA 2.0e-19
FL-Next: Isoform 2 of Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 0.0
Sma3: Histidine kinase 1.829e-31
Internal
sp_v3.0_unigene105336 SustainPine v3.0 771
AutoFact: TCP domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJC9_MALDO 6.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: TCP-domain protein 8.588e-14
Putative N-terminus
sp_v3.0_unigene107322 SustainPine v3.0 365
AutoFact: Phytochrome N (Fragment) n=12 Tax=Pinaceae RepID=Q9FSD5_PINSY 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome A 1.626e-19
Internal
sp_v3.0_unigene108398 SustainPine v3.0 620
AutoFact: PREDICTED: similar to cytokinin receptor 1 n=1 Tax=Vitis vinifera RepID=UPI00019828F5 0.0
FL-Next: Isoform 2 of Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 0.0
Sma3: Histidine kinase 1.267e-31
Internal
sp_v3.0_unigene124056 SustainPine v3.0 386
AutoFact: Phytochrome (Fragment) n=1 Tax=Pseudotsuga menziesii RepID=Q40917_PSEMZ 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome C 3.739e-24
Internal
sp_v3.0_unigene125054 SustainPine v3.0 368
AutoFact: transcription factor TCP8 [Arabidopsis thaliana] sp|Q9C518.1|TCP8_ARATH RecName: Full=Transcription factor TCP8 gb|AAG50694.1|AC079604_1 auxin-induced basic helix-loop-helix transcription factor, putative [Arabidopsis thaliana] gb|AAG50759.1|AC079131_4 au 8.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: TCP-domain protein 9.085e-14
Internal
sp_v3.0_unigene125530 SustainPine v3.0 116
AutoFact: Phytochrome n=12 Tax=Pinaceae RepID=PHY_PICAB 7.0e-15
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome D 9.551e-25
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain