Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: primary miRNA processing

Term: GO:0031053  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene107908 SustainPine v3.0 588
AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9HHX6_POPTR 4.00001e-40
FL-Next: sp=Endoribonuclease Dicer homolog 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Dicer-like protein 3.417e-20
N-terminus
sp_v3.0_unigene108820 SustainPine v3.0 486
AutoFact: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene114924 SustainPine v3.0 373
AutoFact: RecName: Full=Endoribonuclease Dicer homolog 1; AltName: Full=Dicer-like protein 1; Short=OsDCL1 gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group] gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: DsRNA-specific nuclease dicer and related ribonuclease 5.009e-08
Internal
sp_v3.0_unigene122547 SustainPine v3.0 351
AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9RQZ1_RICCO 3.0e-34
FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Dicer-like protein 7.796e-10
Internal
sp_v3.0_unigene151063 SustainPine v3.0 317
AutoFact: PREDICTED: nuclear cap-binding protein subunit 2-like n=1 Tax=Meleagris gallopavo RepID=UPI0002035C1F 1.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear cap-binding protein 3.771e-11
Internal
sp_v3.0_unigene166750 SustainPine v3.0 364
AutoFact: nuclear cap-binding protein subunit 2 [Bombyx mori] sp|Q1HE01.1|NCBP2_BOMMO RecName: Full=Nuclear cap-binding protein subunit 2; AltName: Full=20 kDa nuclear cap-binding protein; AltName: Full=NCBP 20 kDa subunit; Short=CBP20 gb|ABF55961.1| Cbp20 [Bombyx 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear cap-binding protein 1.619e-11
N-terminus
sp_v3.0_unigene168170 SustainPine v3.0 132
AutoFact: CAF protein n=17 Tax=Camelineae RepID=Q56Y50_ARATH 5.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DsRNA-specific nuclease dicer and related ribonuclease 5.614e-08
Internal
sp_v3.0_unigene184508 SustainPine v3.0 507
AutoFact: PREDICTED: cap binding protein 20-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBB931 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear cap-binding protein 4.622e-11
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain