Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleoplasm

Term: GO:0005654  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene1548 SustainPine v3.0 1829
AutoFact: pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 3.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene3459 SustainPine v3.0 1085
AutoFact: partner of Y14-mago [Arabidopsis thaliana] ref|NP_849639.1| partner of Y14-mago [Arabidopsis thaliana] ref|NP_001031023.1| partner of Y14-mago [Arabidopsis thaliana] gb|AAF16626.1|AC011661_4 T23J18.7 [Arabidopsis thaliana] gb|AAO42233.1| unknown protein [ 1.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene5649 SustainPine v3.0 2812
AutoFact: gigantea-like protein [Hordeum vulgare] gb|AAW66946.1| gigantea-like protein [Hordeum vulgare subsp. vulgare] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Gigantea 1.445e-16
C-terminus
sp_v3.0_unigene7779 SustainPine v3.0 1740
AutoFact: [L] COG0419 ATPase involved in DNA repair 1.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene18133 SustainPine v3.0 2070
AutoFact: La protein 1 [Arabidopsis thaliana] gb|AAL07086.1| unknown protein [Arabidopsis thaliana] gb|AEE86109.1| La protein 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene35004 SustainPine v3.0 913
AutoFact: Protein GIGANTEA, putative n=1 Tax=Ricinus communis RepID=B9SEC2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Gigantea 1.055e-16
C-terminus
sp_v3.0_unigene51977 SustainPine v3.0 301
AutoFact: La protein 1 [Arabidopsis thaliana] gb|AAL07086.1| unknown protein [Arabidopsis thaliana] gb|AEE86109.1| La protein 1 [Arabidopsis thaliana] 4.0e-13
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative N-terminus
sp_v3.0_unigene65700 SustainPine v3.0 254
AutoFact: Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9RS49_RICCO 9.0e-20
FL-Next: tr=Lupus la ribonucleoprotein, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene70964 SustainPine v3.0 314
AutoFact: GIGANTEA n=2 Tax=Allium cepa RepID=C7E148_ALLCE 3.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Gigantea 1.997e-12
Putative N-terminus
sp_v3.0_unigene77233 SustainPine v3.0 106
AutoFact: Gigantea-like protein n=34 Tax=Pooideae RepID=Q56S01_HORVD 6.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein GIGANTEA 1.318e-09
Internal
sp_v3.0_unigene102850 SustainPine v3.0 592
AutoFact: Protein GIGANTEA n=39 Tax=Poaceae RepID=GIGAN_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein GIGANTEA 1.318e-09
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain