Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: production of lsiRNA involved in RNA interference

Term: GO:0010599  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene1414 SustainPine v3.0 2039
• AutoFact: Piwi multi-domain protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Argonaute protein group 6.25e-19
Complete
sp_v3.0_unigene3828 SustainPine v3.0 2917
• AutoFact: DsRNA-specific nuclease dicer and related ribonuclease n=2 Tax=Physcomitrella patens RepID=A9RV91_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DsRNA-specific nuclease dicer and related ribonuclease 1.06e-11
Putative Complete
sp_v3.0_unigene6890 SustainPine v3.0 1026
• AutoFact: Endoribonuclease Dicer homolog 1 n=4 Tax=Poaceae RepID=DCL1_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 7.19e-13
Putative Complete
sp_v3.0_unigene9397 SustainPine v3.0 1992
• AutoFact: Eukaryotic translation initiation factor 2c, putative n=1 Tax=Ricinus communis RepID=B9S921_RICCO 0.0
• FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Eukaryotic translation initiation factor 2c, putative 9.233e-24
C-terminus
sp_v3.0_unigene9655 SustainPine v3.0 1121
• AutoFact: Piwi domain containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Argonaute protein group 1.529e-36
Putative Complete
sp_v3.0_unigene9752 SustainPine v3.0 1442
• AutoFact: Argonaute protein group (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HXP0_POPTR 0.0
• FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Eukaryotic translation initiation factor 2c, putative 7.005e-23
Internal
sp_v3.0_unigene9777 SustainPine v3.0 721
• AutoFact: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] 0.0
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DsRNA-specific nuclease dicer and related ribonuclease 5.117e-08
Internal
sp_v3.0_unigene11420 SustainPine v3.0 797
• AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 0.0
• FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Argonaute protein group 1.317e-33
C-terminus
sp_v3.0_unigene13761 SustainPine v3.0 1216
• AutoFact: CAF protein n=17 Tax=Camelineae RepID=Q56Y50_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 1.025e-12
Complete
sp_v3.0_unigene15571 SustainPine v3.0 266
• AutoFact: RecName: Full=Endoribonuclease Dicer homolog 4; AltName: Full=Dicer-like protein 4; Short=OsDCL4; AltName: Full=Protein SHOOT ORGANIZATION 1 gb|ABS32306.1| dicer-like protein [Oryza sativa Japonica Group] 7.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 2.517e-07
N-terminus
sp_v3.0_unigene22042 SustainPine v3.0 830
• AutoFact: Protein argonaute 7 n=3 Tax=Oryza sativa RepID=AGO7_ORYSJ 2.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Argonaute protein group 2.629e-33
Complete
sp_v3.0_unigene34076 SustainPine v3.0 2112
• AutoFact: CAF protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 3.451e-16
C-terminus
sp_v3.0_unigene50893 SustainPine v3.0 181
• AutoFact: dicer-like protein [Oryza sativa Indica Group] 8.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 4.387e-16
Internal
sp_v3.0_unigene56154 SustainPine v3.0 258
• AutoFact: CAF protein n=17 Tax=Camelineae RepID=Q56Y50_ARATH 3.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 4.055e-16
Internal
sp_v3.0_unigene56325 SustainPine v3.0 159
• AutoFact: Argonaute family member n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RTW5_PHYPA 3.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Argonaute protein group 4.841e-16
Internal
sp_v3.0_unigene60453 SustainPine v3.0 172
• AutoFact: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial n=1 Tax=Medicago truncatula RepID=Q2HTA7_MEDTR 4.0e-19
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Dicer-like protein 3.455e-10
Internal
sp_v3.0_unigene64467 SustainPine v3.0 149
• AutoFact: Dicer-like protein 4 n=3 Tax=Arabidopsis RepID=DCL4_ARATH 1.0e-10
• FL-Next: sp=Dicer-like protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Dicer-like 4 3.861e-09
Internal
sp_v3.0_unigene64589 SustainPine v3.0 235
• AutoFact: RecName: Full=Endoribonuclease Dicer homolog 1; AltName: Full=Dicer-like protein 1; Short=OsDCL1 gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group] gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza 5.0e-08
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene68688 SustainPine v3.0 153
• AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9GRS6_POPTR 8.0e-17
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene69619 SustainPine v3.0 218
• AutoFact: AGO1-2 (Fragment) n=1 Tax=Nicotiana benthamiana RepID=Q2LFC3_NICBE 8.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Eukaryotic translation initiation factor 2c, putative 2.663e-19
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain