Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: production of lsiRNA involved in RNA interference

Term: GO:0010599  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene76465 SustainPine v3.0 270
AutoFact: Endoribonuclease Dicer homolog 3a n=1 Tax=Oryza sativa Japonica Group RepID=DCL3A_ORYSJ 1.0e-28
FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Ribonuclease III, putative 1.236e-07
Internal
sp_v3.0_unigene80303 SustainPine v3.0 175
AutoFact: Endoribonuclease Dicer homolog 2 n=2 Tax=Arabidopsis thaliana RepID=DCL2_ARATH 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 1.464e-13
Internal
sp_v3.0_unigene93996 SustainPine v3.0 897
AutoFact: argonaute-like protein [Arabidopsis thaliana] sp|Q9C793.1|AGO7_ARATH RecName: Full=Protein argonaute 7; AltName: Full=Protein ZIPPY gb|AAG60096.1|AC073178_7 pinhead-like protein [Arabidopsis thaliana] gb|AAQ92355.1| ZIPPY [Arabidopsis thaliana] gb|AEE3492 0.0
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Eukaryotic translation initiation factor 2c, putative 1.119e-07
Internal
sp_v3.0_unigene94123 SustainPine v3.0 845
AutoFact: Dicer-like 3 n=1 Tax=Physcomitrella patens RepID=B3SRQ0_9BRYO 5.00264e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 3.916e-13
C-terminus
sp_v3.0_unigene99395 SustainPine v3.0 546
AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9GRS6_POPTR 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Dicer-like protein 4.58e-20
Internal
sp_v3.0_unigene99602 SustainPine v3.0 673
AutoFact: protein dicer-like 2 [Arabidopsis thaliana] ref|NP_001189798.1| protein dicer-like 2 [Arabidopsis thaliana] sp|Q3EBC8.2|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName: Full=Dicer-like protein 2; Short=AtDCL2 gb|AEE73924.1| protein dice 2.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 6.474e-10
C-terminus
sp_v3.0_unigene103424 SustainPine v3.0 304
AutoFact: Isoform 2 of Endoribonuclease Dicer homolog 4 n=1 Tax=Oryza sativa Japonica Group RepID=A7LFZ6-2 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 1.952e-14
Internal
sp_v3.0_unigene105016 SustainPine v3.0 507
AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9SC13_RICCO 6.0e-31
FL-Next: Isoform 2 of Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 0.0
Sma3: Dicer-like 4 1.165e-08
N-terminus
sp_v3.0_unigene106381 SustainPine v3.0 334
AutoFact: Argonaute protein group (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HXP0_POPTR 4.0e-25
FL-Next: sp=Protein argonaute 7; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene107908 SustainPine v3.0 588
AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9HHX6_POPTR 4.00001e-40
FL-Next: sp=Endoribonuclease Dicer homolog 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Dicer-like protein 3.417e-20
N-terminus
sp_v3.0_unigene108820 SustainPine v3.0 486
AutoFact: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene114924 SustainPine v3.0 373
AutoFact: RecName: Full=Endoribonuclease Dicer homolog 1; AltName: Full=Dicer-like protein 1; Short=OsDCL1 gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group] gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: DsRNA-specific nuclease dicer and related ribonuclease 5.009e-08
Internal
sp_v3.0_unigene119246 SustainPine v3.0 114
AutoFact: protein dicer-like 2 [Arabidopsis thaliana] ref|NP_001189798.1| protein dicer-like 2 [Arabidopsis thaliana] sp|Q3EBC8.2|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName: Full=Dicer-like protein 2; Short=AtDCL2 gb|AEE73924.1| protein dice 5.0e-08
FL-Next: Isoform 2 of Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 0.0
Sma3: Dicer-like protein 1.312e-13
Internal
sp_v3.0_unigene119726 SustainPine v3.0 357
AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 1.4013e-45
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Argonaute protein group 1.596e-36
Internal
sp_v3.0_unigene122547 SustainPine v3.0 351
AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9RQZ1_RICCO 3.0e-34
FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Dicer-like protein 7.796e-10
Internal
sp_v3.0_unigene127218 SustainPine v3.0 1864
AutoFact: Argonaute protein group n=2 Tax=fabids RepID=B9N365_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Argonaute protein group 1.16e-36
N-terminus
sp_v3.0_unigene141346 SustainPine v3.0 450
AutoFact: Protein argonaute 1A n=3 Tax=Oryza sativa RepID=AGO1A_ORYSJ 0.0
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Eukaryotic translation initiation factor 2c, putative 2.603e-19
Internal
sp_v3.0_unigene141938 SustainPine v3.0 414
AutoFact: argonaute 1 [Pisum sativum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Argonaute protein group 1.666e-36
Internal
sp_v3.0_unigene145181 SustainPine v3.0 627
AutoFact: Piwi domain containing protein 4.99983e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Argonaute protein group 1.971e-25
N-terminus
sp_v3.0_unigene145277 SustainPine v3.0 2001
AutoFact: Eukaryotic translation initiation factor 2c, putative n=1 Tax=Ricinus communis RepID=B9SJV6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Argonaute protein group 2.714e-36
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain