Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA interference

Term: GO:0016246  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene1397 SustainPine v3.0 1096
• AutoFact: Nonsense-mediated mRNA decay protein, putative n=2 Tax=Malpighiales RepID=B9SS25_RICCO 0.0
• FL-Next: sp=Regulator of nonsense transcripts 1 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene1414 SustainPine v3.0 2039
• AutoFact: Piwi multi-domain protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Argonaute protein group 6.25e-19
Complete
sp_v3.0_unigene3296 SustainPine v3.0 2028
• AutoFact: putative type 1 RNA helicase [Oryza sativa Japonica Group] gb|EEE67210.1| hypothetical protein OsJ_24327 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peptide deformylase 1.11e-15
Putative Complete
sp_v3.0_unigene9397 SustainPine v3.0 1992
• AutoFact: Eukaryotic translation initiation factor 2c, putative n=1 Tax=Ricinus communis RepID=B9S921_RICCO 0.0
• FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Eukaryotic translation initiation factor 2c, putative 9.233e-24
C-terminus
sp_v3.0_unigene9655 SustainPine v3.0 1121
• AutoFact: Piwi domain containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Argonaute protein group 1.529e-36
Putative Complete
sp_v3.0_unigene9752 SustainPine v3.0 1442
• AutoFact: Argonaute protein group (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HXP0_POPTR 0.0
• FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Eukaryotic translation initiation factor 2c, putative 7.005e-23
Internal
sp_v3.0_unigene11420 SustainPine v3.0 797
• AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 0.0
• FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Argonaute protein group 1.317e-33
C-terminus
sp_v3.0_unigene11498 SustainPine v3.0 1313
• AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 0.0
• FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Argonaute protein group 4.545e-30
Internal
sp_v3.0_unigene12483 SustainPine v3.0 894
• AutoFact: PAZ multi-domain protein 2.0e-31
• FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Argonaute protein group 3.573e-16
Internal
sp_v3.0_unigene22042 SustainPine v3.0 830
• AutoFact: Protein argonaute 7 n=3 Tax=Oryza sativa RepID=AGO7_ORYSJ 2.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Argonaute protein group 2.629e-33
Complete
sp_v3.0_unigene34386 SustainPine v3.0 560
• AutoFact: Nonsense-mediated mRNA decay protein, putative n=2 Tax=Malpighiales RepID=B9SS25_RICCO 0.0
• FL-Next: sp=Regulator of nonsense transcripts 1 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene36675 SustainPine v3.0 792
• AutoFact: Nonsense-mediated mRNA decay protein, putative n=2 Tax=Malpighiales RepID=B9SS25_RICCO 8.0e-36
• FL-Next: sp=Regulator of nonsense transcripts 1 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene36836 SustainPine v3.0 215
• AutoFact: TUDOR protein with multiple SNc domains n=2 Tax=Picea RepID=Q0JRI3_PICAB 2.0e-24
• FL-Next: tr=TUDOR protein with multiple SNc domains; Picea abies (Norway spruce) (Picea excelsa). 0.0
Internal
sp_v3.0_unigene43289 SustainPine v3.0 140
• AutoFact: Argonaute protein group n=1 Tax=Populus trichocarpa RepID=B9I4Y6_POPTR 5.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Eukaryotic translation initiation factor 2c, putative 1.631e-13
C-terminus
sp_v3.0_unigene46997 SustainPine v3.0 227
• AutoFact: Eukaryotic translation initiation factor 2c, putative n=1 Tax=Ricinus communis RepID=B9SJV6_RICCO 5.0e-27
• FL-Next: sp=Protein argonaute 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Argonaute protein group 5.975e-17
Internal
sp_v3.0_unigene52825 SustainPine v3.0 443
• AutoFact: protein PINHEAD [Arabidopsis thaliana] ref|NP_001190464.1| protein PINHEAD [Arabidopsis thaliana] sp|Q9XGW1.1|AGO10_ARATH RecName: Full=Protein argonaute 10; AltName: Full=Protein PINHEAD; AltName: Full=Protein ZWILLE gb|AAD40098.1|AF154272_1 PINHEAD [Ara 0.0
• FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Argonaute protein group 1.91e-16
Internal
sp_v3.0_unigene56325 SustainPine v3.0 159
• AutoFact: Argonaute family member n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RTW5_PHYPA 3.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Argonaute protein group 4.841e-16
Internal
sp_v3.0_unigene58155 SustainPine v3.0 288
• AutoFact: ARGONAUTE 1 n=2 Tax=Nicotiana RepID=D6RUV9_TOBAC 3.0e-13
• FL-Next: sp=Protein argonaute 1D; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Argonaute family member 1.451e-11
Internal
sp_v3.0_unigene64161 SustainPine v3.0 242
• AutoFact: Argonaute 2 n=1 Tax=Pisum sativum RepID=A1E5M2_PEA 5.0e-23
• FL-Next: sp=Protein argonaute 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Argonaute protein group 4.364e-17
Internal
sp_v3.0_unigene65219 SustainPine v3.0 208
• AutoFact: DUF1785 domain containing protein 1.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative argonaute protein 1.016e-11
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain