Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: transcription cofactor activity

Term: GO:0003712  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene1249 SustainPine v3.0 2438
AutoFact: pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal 4.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr13 scaffold_120, whole genome shotgun sequence 1.488e-14
Putative Complete
sp_v3.0_unigene3841 SustainPine v3.0 1836
AutoFact: Transcription initiation factor TFIID, subunit TAF1 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TKZ9_PHYPA 0.0
FL-Next: sp=Transcription initiation factor TFIID subunit 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Transcription initiation factor TFIID, subunit TAF1 4.823e-09
Internal
sp_v3.0_unigene8743 SustainPine v3.0 690
AutoFact: Transcription cofactor, putative n=1 Tax=Ricinus communis RepID=B9RHR9_RICCO 1.96182e-44
FL-Next: sp=Histone acetyltransferase HAC1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: p300/CBP acetyltransferase-related protein 1.34e-08
C-terminus
sp_v3.0_unigene8887 SustainPine v3.0 1009
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene11816 SustainPine v3.0 641
AutoFact: Histone acetyltransferase HAC1 n=4 Tax=Arabidopsis RepID=HAC1_ARATH 7.0e-30
FL-Next: sp=Histone acetyltransferase HAC1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: p300/CBP acetyltransferase-related protein 7.399e-09
C-terminus
sp_v3.0_unigene12586 SustainPine v3.0 2068
AutoFact: BTB and TAZ domain protein 4 [Arabidopsis thaliana] gb|AED98350.1| BTB and TAZ domain protein 4 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene13313 SustainPine v3.0 539
AutoFact: transcription cofactor, putative; K04498 E1A/CREB-binding protein [EC:2.3.1.48] 2.0e-15
FL-Next: sp=Histone acetyltransferase HAC1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: p300/CBP acetyltransferase-related protein 5.167e-09
C-terminus
sp_v3.0_unigene13997 SustainPine v3.0 2364
AutoFact: pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal 3.0e-06
FL-Next: sp=Mediator of RNA polymerase II transcription subunit 15a; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative uncharacterized protein At1g15780 8.285e-06
N-terminus
sp_v3.0_unigene14013 SustainPine v3.0 1426
AutoFact: pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal 1.0e-05
FL-Next: sp=Mediator of RNA polymerase II transcription subunit 15a; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene15652 SustainPine v3.0 550
AutoFact: p300/CBP acetyltransferase-related protein 2 [Arabidopsis thaliana] 0.0
FL-Next: Isoform 2 of Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 0.0
Sma3: Histone acetyltransferase 8.981e-14
Internal
sp_v3.0_unigene24143 SustainPine v3.0 1758
AutoFact: transcription cofactor, putative 3.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: CTV.22 3.411e-06
Putative Complete
sp_v3.0_unigene28647 SustainPine v3.0 972
AutoFact: transcription initiation factor TFIID subunit 1-A [Arabidopsis thaliana] sp|Q8LRK9.1|TAF1A_ARATH RecName: Full=Transcription initiation factor TFIID subunit 1-A; Short=AtTAF1a; AltName: Full=TAFII250-A gb|AAM34782.1|AF510669_1 HAF1 [Arabidopsis thaliana] 6.02558e-44
FL-Next: sp=Transcription initiation factor TFIID subunit 1-A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Transcription initiation factor TFIID, subunit TAF1 4.823e-09
C-terminus
sp_v3.0_unigene30788 SustainPine v3.0 1905
AutoFact: pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal 5.0e-13
FL-Next: sp=Mediator of RNA polymerase II transcription subunit 15a; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene37371 SustainPine v3.0 707
AutoFact: ZZ domain containing protein 4.0e-07
FL-Next: Isoform 2 of Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 0.0
Sma3: Histone acetyltransferase 4.541e-11
Internal
sp_v3.0_unigene40178 SustainPine v3.0 381
AutoFact: RecName: Full=Transcription initiation factor TFIID subunit 1; AltName: Full=TAFII250 dbj|BAD37451.1| putative HAC13 protein [Oryza sativa Japonica Group] dbj|BAD37604.1| putative HAC13 protein [Oryza sativa Japonica Group] 2.0e-39
FL-Next: sp=Transcription initiation factor TFIID subunit 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Transcription initiation factor TFIID, subunit TAF1 4.688e-09
Internal
sp_v3.0_unigene43905 SustainPine v3.0 125
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene48934 SustainPine v3.0 202
AutoFact: Probable histone acetyltransferase HAC-like 1 n=4 Tax=Poaceae RepID=HACL1_ORYSJ 9.0e-34
FL-Next: sp=Probable histone acetyltransferase HAC-like 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Histone acetyltransferase 5.081e-14
Internal
sp_v3.0_unigene52123 SustainPine v3.0 291
AutoFact: p300/CBP acetyltransferase-related protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TAD6_PHYPA 9.0e-16
FL-Next: Isoform 2 of Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 0.0
Sma3: p300/CBP acetyltransferase-related protein 7.399e-09
C-terminus
sp_v3.0_unigene52184 SustainPine v3.0 101
AutoFact: Histone acetyltransferase HAC12 n=1 Tax=Arabidopsis thaliana RepID=F4I4I8_ARATH 6.0e-09
FL-Next: Isoform 2 of Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 0.0
Sma3: p300/CBP acetyltransferase-related protein 1.963e-08
Internal
sp_v3.0_unigene52301 SustainPine v3.0 228
AutoFact: similar to pol polyprotein 3.0e-15
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.116e-06
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain