Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Retrotransposon protein, putative, Ty3-gypsy subclass

Source: Description from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene98384 SustainPine v3.0 589
AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 0.0
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.225e-22
Putative Complete
sp_v3.0_unigene99031 SustainPine v3.0 268
AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 1.0e-23
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.206e-13
Putative N-terminus
sp_v3.0_unigene99623 SustainPine v3.0 1102
AutoFact: rve domain containing protein 2.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.311e-17
Putative Complete
sp_v3.0_unigene100415 SustainPine v3.0 469
AutoFact: rve domain containing protein 1.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.015e-14
Putative Complete
sp_v3.0_unigene103023 SustainPine v3.0 394
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q7XEK0_ORYSJ 9.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.958e-11
C-terminus
sp_v3.0_unigene103482 SustainPine v3.0 389
AutoFact: H0306F03.2 protein n=1 Tax=Oryza sativa RepID=Q25A74_ORYSA 8.0e-33
FL-Next: tr=OSJNBa0074B10.8 protein; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Internal
sp_v3.0_unigene105435 SustainPine v3.0 568
AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 0.0
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.708e-19
Putative Complete
sp_v3.0_unigene108114 SustainPine v3.0 477
AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=5 Tax=Oryza sativa RepID=Q2R1L3_ORYSJ 3.00004e-41
FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Internal
sp_v3.0_unigene109416 SustainPine v3.0 417
AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=5 Tax=Oryza sativa RepID=Q2R1L3_ORYSJ 2.0e-40
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
C-terminus
sp_v3.0_unigene111487 SustainPine v3.0 462
AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=3 Tax=Oryza sativa RepID=Q2QST6_ORYSJ 5.0e-34
FL-Next: tr=Putative polyprotein; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Internal
sp_v3.0_unigene113261 SustainPine v3.0 499
AutoFact: OSJNBb0115I09.18 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XL94_ORYSJ 3.0e-33
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.599e-36
Internal
sp_v3.0_unigene115345 SustainPine v3.0 356
AutoFact: RVT_1 domain containing protein 5.0e-16
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.599e-10
Putative C-terminus
sp_v3.0_unigene117419 SustainPine v3.0 306
AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=8 Tax=Oryza sativa RepID=Q2QR60_ORYSJ 3.0e-21
FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Internal
sp_v3.0_unigene120829 SustainPine v3.0 339
AutoFact: OSJNBb0089K24.5 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XXG5_ORYSJ 6.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative Complete
sp_v3.0_unigene121149 SustainPine v3.0 273
AutoFact: Putative 22 kDa kafirin cluster; Ty3-Gypsy type n=2 Tax=Oryza sativa RepID=Q7G6A5_ORYSJ 8.0e-24
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 6.457e-35
Internal
sp_v3.0_unigene123606 SustainPine v3.0 435
AutoFact: Putative gag-pol polyprotein, identical n=2 Tax=Solanum demissum RepID=Q5NRP4_SOLDE 2.0e-26
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.4013e-45
Putative N-terminus
sp_v3.0_unigene125331 SustainPine v3.0 247
AutoFact: Pol protein n=1 Tax=Cucumis melo subsp. melo RepID=Q84KB0_CUCME 2.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative Complete
sp_v3.0_unigene125699 SustainPine v3.0 403
AutoFact: zf-H2C2 domain containing protein 9.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.443e-25
Putative Complete
sp_v3.0_unigene132607 SustainPine v3.0 300
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y0A9_ORYSJ 3.0e-17
FL-Next: tr=Putative retroelement; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.804e-23
Internal
sp_v3.0_unigene134661 SustainPine v3.0 322
AutoFact: Retrotransposon protein, putative, Ty3-gypsy sub-class n=1 Tax=Oryza sativa Japonica Group RepID=Q53KP3_ORYSJ 3.0e-18
FL-Next: tr=OSJNBa0074B10.8 protein; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 7.854e-36
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain