Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Retrotransposon protein, putative, Ty3-gypsy subclass

Source: Description from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene65153 SustainPine v3.0 144
AutoFact: Pol protein n=1 Tax=Cucumis melo subsp. melo RepID=Q84KB0_CUCME 2.0e-10
FL-Next: tr=Uncharacterized protein; Phytophthora ramorum (Sudden oak death agent). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Internal
sp_v3.0_unigene65281 SustainPine v3.0 218
AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=2 Tax=Oryza sativa RepID=Q10GH3_ORYSJ 1.0e-15
FL-Next: tr=Putative retroelement; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative C-terminus
sp_v3.0_unigene65282 SustainPine v3.0 301
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q53NJ3_ORYSJ 2.0e-22
FL-Next: tr=Retrotransposon protein, putative, unclassified; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 9.859e-26
Internal
sp_v3.0_unigene66048 SustainPine v3.0 429
AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=8 Tax=Oryza sativa RepID=Q2QR60_ORYSJ 5.0e-37
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
C-terminus
sp_v3.0_unigene66177 SustainPine v3.0 432
AutoFact: OSJNBb0049I21.5 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XRV6_ORYSJ 9.0e-35
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative Complete
sp_v3.0_unigene66178 SustainPine v3.0 436
AutoFact: Putative polyprotein (Fragment) n=1 Tax=Cicer arietinum RepID=Q949K9_CICAR 4.0e-27
FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy sub-class; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.782e-13
Putative Complete
sp_v3.0_unigene66214 SustainPine v3.0 372
AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SQW9_ARATH 6.0e-33
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.091e-32
Putative C-terminus
sp_v3.0_unigene66274 SustainPine v3.0 217
AutoFact: H0515C11.9 protein n=1 Tax=Oryza sativa RepID=Q01MI2_ORYSA 3.0e-17
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
N-terminus
sp_v3.0_unigene66409 SustainPine v3.0 316
AutoFact: OSJNBa0074B10.6 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q7XS94_ORYSJ 5.0e-19
FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy sub-class; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.51e-18
Internal
sp_v3.0_unigene66501 SustainPine v3.0 261
AutoFact: Polyprotein (Fragment) n=1 Tax=Citrus sinensis RepID=Q2MCK3_CITSI 3.0e-20
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 7.147e-20
Putative N-terminus
sp_v3.0_unigene66575 SustainPine v3.0 365
AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=2 Tax=Poaceae RepID=Q2QUR6_ORYSJ 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.181e-23
Putative Complete
sp_v3.0_unigene66611 SustainPine v3.0 402
AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 9.0e-39
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.134e-21
Putative C-terminus
sp_v3.0_unigene66753 SustainPine v3.0 319
AutoFact: OSJNBa0059H15.7 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XXI2_ORYSJ 1.0e-15
FL-Next: tr=OSJNBa0059H15.7 protein; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.911e-17
Internal
sp_v3.0_unigene66855 SustainPine v3.0 387
AutoFact: Putative polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6F2D6_SOLDE 7.0e-31
FL-Next: tr=Putative polyprotein, identical; Solanum demissum (Wild potato). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 9.80909e-45
Internal
sp_v3.0_unigene67079 SustainPine v3.0 273
AutoFact: Pol protein n=1 Tax=Cucumis melo subsp. melo RepID=Q84KB0_CUCME 7.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative Complete
sp_v3.0_unigene67165 SustainPine v3.0 345
AutoFact: Polyprotein n=1 Tax=Sorghum bicolor RepID=Q9XE68_SORBI 3.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 6.713e-38
Putative Complete
sp_v3.0_unigene67587 SustainPine v3.0 335
AutoFact: ORF333 n=1 Tax=Vitis vinifera RepID=B6VJW0_VITVI 4.0e-35
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.39114e-43
N-terminus
sp_v3.0_unigene67736 SustainPine v3.0 249
AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q10G32_ORYSJ 2.0e-16
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative N-terminus
sp_v3.0_unigene67911 SustainPine v3.0 372
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q6UUH7_ORYSJ 3.0e-29
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.13e-34
N-terminus
sp_v3.0_unigene68016 SustainPine v3.0 375
AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2R0G6_ORYSJ 5.0e-30
FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.14094e-41
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain