Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Retrotransposon protein, putative, Ty3-gypsy subclass

Source: Description from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene164601 SustainPine v3.0 422
AutoFact: Unassigned protein
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.087e-17
Putative C-terminus
sp_v3.0_unigene165034 SustainPine v3.0 242
AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 3.0e-18
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.7236e-43
Internal
sp_v3.0_unigene165036 SustainPine v3.0 290
AutoFact: Polyprotein n=1 Tax=Sorghum bicolor RepID=Q9XE68_SORBI 6.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative Complete
sp_v3.0_unigene165130 SustainPine v3.0 228
AutoFact: OSJNBa0035O13.13 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XSL7_ORYSJ 4.0e-16
FL-Next: tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.657e-22
Putative N-terminus
sp_v3.0_unigene165224 SustainPine v3.0 210
AutoFact: Retrotransposon protein, putative, Ty3-gypsy sub-class n=1 Tax=Oryza sativa Japonica Group RepID=Q53JQ7_ORYSJ 2.0e-15
FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 6.965e-23
Internal
sp_v3.0_unigene165892 SustainPine v3.0 200
AutoFact: Putative retrotransposon protein n=1 Tax=Phyllostachys edulis RepID=D3IVJ7_9POAL 1.0e-16
FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy sub-class; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.368e-36
Putative C-terminus
sp_v3.0_unigene167370 SustainPine v3.0 239
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 6.289e-40
Putative Complete
sp_v3.0_unigene168023 SustainPine v3.0 360
AutoFact: Putative integrase (Fragment) n=7 Tax=Cucumis melo RepID=B0B0F4_CUCME 5.0e-25
FL-Next: tr=Putative uncharacterized protein; Beta vulgaris (Sugar beet). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.604e-10
Internal
sp_v3.0_unigene168177 SustainPine v3.0 228
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q75HH6_ORYSJ 4.0e-17
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.14399e-43
Internal
sp_v3.0_unigene183452 SustainPine v3.0 597
AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=2 Tax=Poaceae RepID=Q2QUR6_ORYSJ 0.0
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.833e-30
C-terminus
sp_v3.0_unigene185112 SustainPine v3.0 317
AutoFact: Integrase (Fragment) n=1 Tax=Gossypium herbaceum RepID=Q7XYU4_GOSHE 4.0e-25
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 5.085e-09
Internal
sp_v3.0_unigene186261 SustainPine v3.0 353
AutoFact: retrotransposable element Tf2 155 kDa protein type 1-like 9.0e-28
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.609e-15
Internal
sp_v3.0_unigene186492 SustainPine v3.0 526
AutoFact: Polyprotein n=1 Tax=Oryza australiensis RepID=Q0ZLH4_9ORYZ 0.0
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative C-terminus
sp_v3.0_unigene186908 SustainPine v3.0 466
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q7XEK0_ORYSJ 2.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 9.7e-21
Putative Complete
sp_v3.0_unigene187222 SustainPine v3.0 507
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=A2Q2C7_MEDTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.47105e-41
Putative Complete
sp_v3.0_unigene187338 SustainPine v3.0 451
AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QQP3_ORYSJ 4.0e-37
FL-Next: tr=OSIGBa0139I12.6 protein; Oryza sativa (Rice). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.24208e-44
Internal
sp_v3.0_unigene187426 SustainPine v3.0 450
AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SQW9_ARATH 3.00018e-42
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.176e-21
N-terminus
sp_v3.0_unigene187553 SustainPine v3.0 552
AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.101e-21
Putative Complete
sp_v3.0_unigene189889 SustainPine v3.0 495
AutoFact: RVT_1 domain containing protein 2.0e-15
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 8.173e-15
C-terminus
sp_v3.0_unigene194254 SustainPine v3.0 506
AutoFact: PREDICTED: similar to retrotransposon protein, putative, Ty3-gypsy sub-class n=1 Tax=Vitis vinifera RepID=UPI000198569A 1.00053e-42
FL-Next: tr=Retrotransposon protein; Beta vulgaris (Sugar beet). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 6.18505e-41
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain