Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: red or far-red light signaling pathway

Term: GO:0010017  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene1185 SustainPine v3.0 1965
AutoFact: COP9 signalosome complex subunit 3 [Arabidopsis thaliana] sp|Q8W575.2|CSN3_ARATH RecName: Full=COP9 signalosome complex subunit 3; Short=Signalosome subunit 3; AltName: Full=Protein FUSCA 11 gb|AAL58102.1|AF395059_1 CSN complex subunit 3 [Arabidopsis thal 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: COP9 signalosome complex subunit 3 3.263e-13
Complete
sp_v3.0_unigene1201 SustainPine v3.0 1239
AutoFact: putative COP9 signalosome complex subunit 2 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: COP9 signalosome complex subunit 2 2.548e-17
C-terminus
sp_v3.0_unigene1913 SustainPine v3.0 2472
AutoFact: Phytochrome n=12 Tax=Pinaceae RepID=PHY_PICAB 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome A 6.172e-19
C-terminus
sp_v3.0_unigene2136 SustainPine v3.0 1621
AutoFact: [R] COG2319 FOG: WD40 repeat 7.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin ligase protein cop1, putative 8.756e-14
C-terminus
sp_v3.0_unigene2301 SustainPine v3.0 4162
AutoFact: Pseudo response regulator n=3 Tax=Populus RepID=B9HM08_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pseudo-response regulator 59 homologue 6.743e-09
Complete
sp_v3.0_unigene2485 SustainPine v3.0 3456
AutoFact: [R] COG2319 FOG: WD40 repeat 4.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin ligase protein cop1, putative 9.136e-11
Complete
sp_v3.0_unigene2553 SustainPine v3.0 1274
AutoFact: putative COP9 signalosome complex subunit 2 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: COP9 signalosome complex subunit 2 2.548e-17
C-terminus
sp_v3.0_unigene2821 SustainPine v3.0 1396
AutoFact: Nucleoside diphosphate kinase n=1 Tax=Ricinus communis RepID=B9RAM1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleoside diphosphate kinase 0.0
Complete
sp_v3.0_unigene3886 SustainPine v3.0 1314
AutoFact: Response regulator 1 n=1 Tax=Pinus pinea RepID=C0LLL0_PINPI 0.0
FL-Next: tr=Response regulator 1; Pinus pinea (Italian stone pine). 0.0
Sma3: Type-a response regulator 1.071e-38
Complete
sp_v3.0_unigene4075 SustainPine v3.0 1942
AutoFact: [R] COG2319 FOG: WD40 repeat 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin ligase protein cop1, putative 1.052e-13
C-terminus
sp_v3.0_unigene4289 SustainPine v3.0 525
AutoFact: Os02g0203000 protein n=2 Tax=Oryza sativa RepID=Q0E2Y8_ORYSJ 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transcription factor HY5 1.887e-18
Putative Complete
sp_v3.0_unigene4654 SustainPine v3.0 259
AutoFact: R2R3-MYB transcription factor MYB4 n=1 Tax=Picea glauca RepID=A5JYE8_PICGL 6.0e-23
FL-Next: tr=R2R3-MYB transcription factor MYB4; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: MYB transcription factor 8.799e-25
N-terminus
sp_v3.0_unigene5236 SustainPine v3.0 2224
AutoFact: Protein AFR, putative n=1 Tax=Ricinus communis RepID=B9S0Z8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein AFR, putative 1.016e-07
Complete
sp_v3.0_unigene5649 SustainPine v3.0 2812
AutoFact: gigantea-like protein [Hordeum vulgare] gb|AAW66946.1| gigantea-like protein [Hordeum vulgare subsp. vulgare] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Gigantea 1.445e-16
C-terminus
sp_v3.0_unigene6057 SustainPine v3.0 2091
AutoFact: Helix-loop-helix DNA-binding [Medicago truncatula] 5.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Helix-loop-helix DNA-binding domain containing protein, expressed 5.729e-08
Complete
sp_v3.0_unigene6623 SustainPine v3.0 1233
AutoFact: Protein SENSITIVITY TO RED LIGHT REDUCED, putative n=1 Tax=Ricinus communis RepID=B9S4K4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6723 SustainPine v3.0 1477
AutoFact: Type A response regulator RR1 n=1 Tax=Phaseolus vulgaris RepID=B0YGG5_PHAVU 2.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Type-a response regulator 2.982e-30
Complete
sp_v3.0_unigene7708 SustainPine v3.0 1132
AutoFact: PHO1-7 n=1 Tax=Physcomitrella patens RepID=A9LSG1_9BRYO 0.0
FL-Next: sp=Phosphate transporter PHO1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: PHO1-like protein 3.144e-34
C-terminus
sp_v3.0_unigene8999 SustainPine v3.0 694
AutoFact: COP1 homolog [Solanum lycopersicum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: COP1 9.329e-11
Putative C-terminus
sp_v3.0_unigene10133 SustainPine v3.0 1998
AutoFact: COP9 signalosome complex subunit 1 [Arabidopsis thaliana] sp|P45432.2|CSN1_ARATH RecName: Full=COP9 signalosome complex subunit 1; Short=CSN complex subunit 1; AltName: Full=Constitutive photomorphogenesis protein 11; AltName: Full=Protein FUSCA 6 gb|AAK2 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: COP9 signalosome complex subunit 1 4.617e-09
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain