Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: red or far-red light signaling pathway

Term: GO:0010017  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene69255 SustainPine v3.0 290
• AutoFact: Response regulator 1 n=1 Tax=Pinus pinea RepID=C0LLL0_PINPI 9.0e-26
• FL-Next: tr=Response regulator 1; Pinus pinea (Italian stone pine). 0.0
• Sma3: Type-a response regulator 6.216e-39
Internal
sp_v3.0_unigene70964 SustainPine v3.0 314
• AutoFact: GIGANTEA n=2 Tax=Allium cepa RepID=C7E148_ALLCE 3.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Gigantea 1.997e-12
Putative N-terminus
sp_v3.0_unigene71531 SustainPine v3.0 132
• AutoFact: putative bZIP protein HY5 [Oryza sativa Japonica Group] 3.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transcription factor HY5 2.378e-14
Internal
sp_v3.0_unigene72703 SustainPine v3.0 329
• AutoFact: Response regulator 1 n=1 Tax=Pinus pinea RepID=C0LLL0_PINPI 2.0e-29
• FL-Next: tr=Response regulator 1; Pinus pinea (Italian stone pine). 0.0
• Sma3: Type-a response regulator 7.514e-39
Internal
sp_v3.0_unigene73317 SustainPine v3.0 249
• AutoFact: deetiolated 1-like protein [Capsicum annuum] 9.0e-18
• FL-Next: sp=Light-mediated development protein DET1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
• Sma3: Light-mediated development protein DET1 2.258e-14
Internal
sp_v3.0_unigene73647 SustainPine v3.0 484
• AutoFact: Nucleoside diphosphate kinase n=4 Tax=Paxillus RepID=Q5V8K3_PAXIN 0.0
• FL-Next: sp=Nucleoside diphosphate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleoside diphosphate kinase 0.0
Putative Complete
sp_v3.0_unigene73739 SustainPine v3.0 433
• AutoFact: MYB transcription factor MYB181 n=2 Tax=Glycine max RepID=Q0PJJ6_SOYBN 3.9937e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: MYB transcription factor 1.347e-38
N-terminus
sp_v3.0_unigene74619 SustainPine v3.0 206
• AutoFact: Type A response regulator n=1 Tax=Selaginella moellendorffii RepID=D8SLQ9_SELML 5.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Type-a response regulator 1.459e-34
Internal
sp_v3.0_unigene77149 SustainPine v3.0 340
• AutoFact: MYB transcription factor [Arabidopsis thaliana] 1.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: MYB transcription factor 1.008e-28
Internal
sp_v3.0_unigene77233 SustainPine v3.0 106
• AutoFact: Gigantea-like protein n=34 Tax=Pooideae RepID=Q56S01_HORVD 6.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Protein GIGANTEA 1.318e-09
Internal
sp_v3.0_unigene78904 SustainPine v3.0 298
• AutoFact: putative COP9 signalosome complex subunit 2 [Oryza sativa Japonica Group] 1.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: COP9 signalosome complex subunit 2 6.859e-13
Internal
sp_v3.0_unigene79589 SustainPine v3.0 283
• AutoFact: Phytochrome (Fragment) n=1 Tax=Pseudotsuga menziesii RepID=Q40917_PSEMZ 8.0e-33
• FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Phytochrome A 7.793e-21
Internal
sp_v3.0_unigene97175 SustainPine v3.0 522
• AutoFact: SPA1-related 4 protein [Arabidopsis thaliana] ref|NP_849802.1| SPA1-related 4 protein [Arabidopsis thaliana] sp|Q94BM7.1|SPA4_ARATH RecName: Full=Protein SPA1-RELATED 4 gb|AAK64180.1| putative phytochrome A supressor spa1 protein [Arabidopsis thaliana] gb 5.0e-14
• FL-Next: sp=Protein SPA1-RELATED 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene98464 SustainPine v3.0 411
• AutoFact: SPA1-related 4 protein [Arabidopsis thaliana] ref|NP_849802.1| SPA1-related 4 protein [Arabidopsis thaliana] sp|Q94BM7.1|SPA4_ARATH RecName: Full=Protein SPA1-RELATED 4 gb|AAK64180.1| putative phytochrome A supressor spa1 protein [Arabidopsis thaliana] gb 1.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene99474 SustainPine v3.0 949
• AutoFact: Phytochrome n=12 Tax=Pinaceae RepID=PHY_PICAB 0.0
• FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Phytochrome A 1.189e-17
Putative C-terminus
sp_v3.0_unigene99805 SustainPine v3.0 948
• AutoFact: Phosphate transporter PHO1-3 n=2 Tax=Oryza sativa RepID=PHO13_ORYSJ 0.0
• FL-Next: sp=Phosphate transporter PHO1-3; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: PHO1-like protein 9.483e-39
C-terminus
sp_v3.0_unigene101258 SustainPine v3.0 557
• AutoFact: Phytochrome N (Fragment) n=12 Tax=Pinaceae RepID=Q9FSD5_PINSY 0.0
• FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Phytochrome 2.305e-15
Internal
sp_v3.0_unigene102850 SustainPine v3.0 592
• AutoFact: Protein GIGANTEA n=39 Tax=Poaceae RepID=GIGAN_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Protein GIGANTEA 1.318e-09
Internal
sp_v3.0_unigene103704 SustainPine v3.0 388
• AutoFact: Protein SPA1-RELATED 4 n=2 Tax=Arabidopsis RepID=SPA4_ARATH 2.0e-26
• FL-Next: sp=Protein SPA1-RELATED 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene106028 SustainPine v3.0 271
• AutoFact: COP1 like protein [Arabidopsis thaliana] 2.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin ligase protein cop1, putative 8.033e-11
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain