Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: poly(A)-specific ribonuclease activity

Term: GO:0004535  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene1010 SustainPine v3.0 1742
• AutoFact: Endonuclease/exonuclease/phosphatase family protein-like n=2 Tax=Oryza sativa RepID=Q5ZE24_ORYSJ 6.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene1686 SustainPine v3.0 2984
• AutoFact: carbon catabolite repressor protein 4-like 1 [Arabidopsis thaliana] sp|Q8W0Z9.1|CCR4A_ARATH RecName: Full=Carbon catabolite repressor protein 4 homolog 1; Short=CCR4 homolog 1 gb|AAL58932.1|AF462845_1 AT3g58560/F14P22_150 [Arabidopsis thaliana] gb|AAM9136 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene2150 SustainPine v3.0 493
• AutoFact: Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana] sp|Q9LG26.2|PARN_ARATH RecName: Full=Poly(A)-specific ribonuclease PARN; AltName: Full=Polyadenylate-specific ribonuclease; Short=AtPARN; AltName: Full=Protein ABA hypersensitive germination 2 dbj| 1.0e-31
• FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H2A 0.0
Putative Complete
sp_v3.0_unigene6206 SustainPine v3.0 2176
• AutoFact: Carbon catabolite repressor protein 4 homolog 5 n=2 Tax=Arabidopsis RepID=CCR4E_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome chr17 scaffold_16, whole genome shotgun sequence 6.946e-06
Complete
sp_v3.0_unigene7999 SustainPine v3.0 1556
• AutoFact: [A] COG5239 mRNA deadenylase, exonuclease subunit and related nucleases 3.0e-28
• FL-Next: Isoform 2 of Carbon catabolite repressor protein 4 homolog 4 OS=Arabidopsis thaliana GN=CCR4-4 0.0
Complete
sp_v3.0_unigene23209 SustainPine v3.0 862
• AutoFact: Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana] sp|Q9LG26.2|PARN_ARATH RecName: Full=Poly(A)-specific ribonuclease PARN; AltName: Full=Polyadenylate-specific ribonuclease; Short=AtPARN; AltName: Full=Protein ABA hypersensitive germination 2 dbj| 1.0e-37
• FL-Next: sp=Poly(A)-specific ribonuclease PARN; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene41219 SustainPine v3.0 948
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene68848 SustainPine v3.0 139
• AutoFact: Carbon catabolite repressor protein 4 homolog 2 n=2 Tax=Arabidopsis RepID=CCR4B_ARATH 3.0e-13
• FL-Next: sp=Carbon catabolite repressor protein 4 homolog 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene68983 SustainPine v3.0 360
• AutoFact: gpm725; LOC100279626; K12603 CCR4-NOT transcription complex subunit 6 [EC:3.1.-.-] 5.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene70064 SustainPine v3.0 492
• AutoFact: gpm725; LOC100279626; K12603 CCR4-NOT transcription complex subunit 6 [EC:3.1.-.-] 4.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene73638 SustainPine v3.0 273
• AutoFact: carbon catabolite repressor protein 4-like 1 [Arabidopsis thaliana] sp|Q8W0Z9.1|CCR4A_ARATH RecName: Full=Carbon catabolite repressor protein 4 homolog 1; Short=CCR4 homolog 1 gb|AAL58932.1|AF462845_1 AT3g58560/F14P22_150 [Arabidopsis thaliana] gb|AAM9136 1.0e-14
• FL-Next: sp=Carbon catabolite repressor protein 4 homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene81781 SustainPine v3.0 114
• AutoFact: carbon catabolite repressor protein 4-like 2 [Arabidopsis thaliana] sp|Q9M2F8.2|CCR4B_ARATH RecName: Full=Carbon catabolite repressor protein 4 homolog 2; Short=CCR4 homolog 2 gb|AEE79801.1| carbon catabolite repressor protein 4-like 2 [Arabidopsis thalia 7.0e-10
• FL-Next: sp=Carbon catabolite repressor protein 4 homolog 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene97556 SustainPine v3.0 486
• AutoFact: Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana] sp|Q9LG26.2|PARN_ARATH RecName: Full=Poly(A)-specific ribonuclease PARN; AltName: Full=Polyadenylate-specific ribonuclease; Short=AtPARN; AltName: Full=Protein ABA hypersensitive germination 2 dbj| 1.0e-34
• FL-Next: sp=Poly(A)-specific ribonuclease PARN; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene114407 SustainPine v3.0 411
• AutoFact: Unassigned protein
• FL-Next: sp=Carbon catabolite repressor protein 4 homolog 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene115830 SustainPine v3.0 370
• AutoFact: Carbon catabolite repressor protein 4 homolog 1 n=2 Tax=Arabidopsis RepID=CCR4A_ARATH 2.0e-22
• FL-Next: sp=Carbon catabolite repressor protein 4 homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene126987 SustainPine v3.0 1029
• AutoFact: Pathogenesis-related protein 10 n=1 Tax=Pinus pinaster RepID=D9IWE1_PINPS 0.0
• FL-Next: tr=Pathogenesis-related protein 10; Pinus pinaster (Maritime pine). 0.0
• Sma3: Putative intracellular pathogenesis-related protein 2.995e-17
Complete
sp_v3.0_unigene134869 SustainPine v3.0 264
• AutoFact: carbon catabolite repressor protein 4-like 2 [Arabidopsis thaliana] sp|Q9M2F8.2|CCR4B_ARATH RecName: Full=Carbon catabolite repressor protein 4 homolog 2; Short=CCR4 homolog 2 gb|AEE79801.1| carbon catabolite repressor protein 4-like 2 [Arabidopsis thalia 5.0e-22
• FL-Next: sp=Carbon catabolite repressor protein 4 homolog 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene137179 SustainPine v3.0 201
• AutoFact: protein of endonuclease / exonuclease / phosphatase family; K12603 CCR4-NOT transcription complex subunit 6 [EC:3.1.-.-] 4.0e-15
• FL-Next: sp=Carbon catabolite repressor protein 4 homolog 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene183843 SustainPine v3.0 503
• AutoFact: [A] COG5239 mRNA deadenylase, exonuclease subunit and related nucleases 6.0e-05
• FL-Next: Isoform 5 of Carbon catabolite repressor protein 4 homolog 4 OS=Arabidopsis thaliana GN=CCR4-4 0.0
Putative N-terminus
sp_v3.0_unigene209222 SustainPine v3.0 282
• AutoFact: CCR4-NOT transcription complex subunit 6 n=1 Tax=Zea mays RepID=B6SJQ2_MAIZE 3.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Misassembled

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain