Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA metabolic process

Term: GO:0016070  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene995 SustainPine v3.0 1400
AutoFact: AKAP7_NLS domain containing protein 2.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYA6 9.234e-09
C-terminus
sp_v3.0_unigene1474 SustainPine v3.0 2987
AutoFact: Initiation factor eIF-4 gamma, middle; Up-frameshift suppressor 2 [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene3191 SustainPine v3.0 1178
AutoFact: RNA ligase/cyclic nucleotide phosphodiesterase family protein [Arabidopsis thaliana] dbj|BAB10900.1| unnamed protein product [Arabidopsis thaliana] gb|AAQ56845.1| At5g40190 [Arabidopsis thaliana] gb|AAQ89659.1| At5g40190 [Arabidopsis thaliana] dbj|BAD4287 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene5447 SustainPine v3.0 5148
AutoFact: putative eukaryotic translation initiation factor 4G [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene7035 SustainPine v3.0 1441
AutoFact: Ribonuclease n=1 Tax=Picea sitchensis RepID=D5AEE7_PICSI 0.0
FL-Next: sp=Ribonuclease; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribonuclease 7.859e-23
Complete
sp_v3.0_unigene7742 SustainPine v3.0 1807
AutoFact: Os12g0256300 protein n=6 Tax=Oryza sativa RepID=Q2QUQ9_ORYSJ 0.0
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Putative C-terminus
sp_v3.0_unigene8915 SustainPine v3.0 1499
AutoFact: AKAP7_NLS domain containing protein 6.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYA6 9.234e-09
C-terminus
sp_v3.0_unigene15535 SustainPine v3.0 929
AutoFact: Eukaryotic initiation factor-like protein n=9 Tax=Oryza RepID=Q84PB3_ORYSJ 0.0
FL-Next: sp=Eukaryotic initiation factor iso-4F subunit p82-34; Triticum aestivum (Wheat). 0.0
Sma3: Translation initiation factor eIF(Iso)4G 1.124e-08
Internal
sp_v3.0_unigene15749 SustainPine v3.0 669
AutoFact: Eukaryotic translation initiation factor 4g, putative n=1 Tax=Ricinus communis RepID=B9SKF9_RICCO 5.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene18605 SustainPine v3.0 3144
AutoFact: MIF4G_like multi-domain protein 1.96182e-44
FL-Next: sp=Nuclear cap-binding protein subunit 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Nuclear cap-binding protein CBP80 1.945e-09
Complete
sp_v3.0_unigene22671 SustainPine v3.0 737
AutoFact: Os06g0140800 protein n=3 Tax=Oryza sativa RepID=Q0DEQ5_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: E3 ubiquitin ligase 9.787e-19
C-terminus
sp_v3.0_unigene23093 SustainPine v3.0 2439
AutoFact: Eukaryotic translation initiation factor 4G n=2 Tax=Carica papaya RepID=E3V0H9_CARPA 0.0
FL-Next: Isoform 2 of Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G 0.0
Internal
sp_v3.0_unigene24217 SustainPine v3.0 441
AutoFact: Secretin_N_2 multi-domain protein 3.0e-07
coding
sp_v3.0_unigene24346 SustainPine v3.0 1724
AutoFact: Eukaryotic translation initiation factor 4g, putative n=1 Tax=Ricinus communis RepID=B9SKF9_RICCO 0.0
FL-Next: Isoform 2 of Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G 0.0
Internal
sp_v3.0_unigene28599 SustainPine v3.0 1631
AutoFact: Regulator of nonsense transcripts, putative n=1 Tax=Ricinus communis RepID=B9SD55_RICCO 0.0
FL-Next: tr=Regulator of nonsense transcripts, putative; Ricinus communis (Castor bean). 0.0
N-terminus
sp_v3.0_unigene33096 SustainPine v3.0 1020
AutoFact: Cyclic phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9S8G6_RICCO 1.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene33442 SustainPine v3.0 841
AutoFact: Cyclic phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9S8G6_RICCO 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cyclic phosphodiesterase 2.608e-09
Complete
sp_v3.0_unigene33633 SustainPine v3.0 541
AutoFact: Cyclic phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9S8G6_RICCO 1.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene34949 SustainPine v3.0 2178
AutoFact: putative eukaryotic translation initiation factor 4G [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene35128 SustainPine v3.0 772
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain