Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA metabolic process

Term: GO:0016070  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene135218 SustainPine v3.0 297
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene137719 SustainPine v3.0 208
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 3.013e-11
Internal
sp_v3.0_unigene143259 SustainPine v3.0 842
AutoFact: Regulator of nonsense transcripts, putative n=1 Tax=Ricinus communis RepID=B9SD55_RICCO 0.0
FL-Next: tr=Regulator of nonsense transcripts, putative; Ricinus communis (Castor bean). 0.0
N-terminus
sp_v3.0_unigene148695 SustainPine v3.0 295
AutoFact: Tetratricopeptide-like helical [Medicago truncatula] 5.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide (PPR) repeat-containing protein-like 1.972e-12
N-terminus
sp_v3.0_unigene149284 SustainPine v3.0 327
AutoFact: MIF4G domain and MA3 domain-containing protein [Arabidopsis thaliana] dbj|BAD44002.1| unknown protein [Arabidopsis thaliana] dbj|BAE98902.1| hypothetical protein [Arabidopsis thaliana] gb|AED92488.1| MIF4G domain and MA3 domain-containing protein [Arabido 2.99878e-43
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene151114 SustainPine v3.0 384
AutoFact: GI13953 n=1 Tax=Drosophila mojavensis RepID=B4KKI2_DROMO 7.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene151295 SustainPine v3.0 382
AutoFact: Rudimentary enhancer n=1 Tax=Oxyrrhis marina RepID=A7WQD6_OXYMA 1.0e-27
FL-Next: sp=Enhancer of rudimentary homolog; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Rudimentary enhancer 3.895e-10
Complete
sp_v3.0_unigene151831 SustainPine v3.0 356
AutoFact: ATP-dependent RNA helicase, TRAMP complex subunit Mtr4 [Schizosaccharomyces pombe 972h-] sp|O14232.1|YDVG_SCHPO RecName: Full=Uncharacterized helicase C6F12.16c emb|CAB11099.1| ATP-dependent RNA helicase, TRAMP complex subunit Mtr4 [Schizosaccharomyces po 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Helicase, putative 9.072e-12
N-terminus
sp_v3.0_unigene162142 SustainPine v3.0 195
AutoFact: Nuclear cap-binding protein n=4 Tax=Solanum tuberosum RepID=C0L7C9_SOLTU 7.0e-11
FL-Next: sp=Nuclear cap-binding protein subunit 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Cap binding protein, putative 7.797e-06
Putative C-terminus
sp_v3.0_unigene162541 SustainPine v3.0 408
AutoFact: Regulator of nonsense transcripts, putative n=1 Tax=Ricinus communis RepID=B9SD55_RICCO 0.0
FL-Next: tr=Regulator of nonsense transcripts, putative; Ricinus communis (Castor bean). 0.0
N-terminus
sp_v3.0_unigene165464 SustainPine v3.0 268
AutoFact: putative pre-mRNA-splicing factor cwc-22 [Oryza sativa Indica Group] 1.0e-26
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene169684 SustainPine v3.0 327
AutoFact: GRP multi-domain protein 3.0e-16
Sma3: Glycine-rich protein 2.897e-16
coding
sp_v3.0_unigene171258 SustainPine v3.0 376
AutoFact: Herpes_gp2 multi-domain protein 1.0e-09
coding
sp_v3.0_unigene171386 SustainPine v3.0 283
AutoFact: Herpes_gp2 multi-domain protein 2.0e-14
Sma3: Glycine-rich protein 9.342e-12
coding
sp_v3.0_unigene173242 SustainPine v3.0 276
AutoFact: Nop14 multi-domain protein 2.0e-10
coding
sp_v3.0_unigene186654 SustainPine v3.0 318
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene195281 SustainPine v3.0 261
AutoFact: Eukaryotic translation initiation factor 4G n=2 Tax=Carica papaya RepID=E3V0H9_CARPA 1.0e-13
FL-Next: Isoform 2 of Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G 0.0
Sma3: Eukaryotic translation initiation factor 4g, putative 9.747e-06
Internal
sp_v3.0_unigene198244 SustainPine v3.0 585
AutoFact: Herpes_gp2 multi-domain protein 9.0e-15
putative_coding
sp_v3.0_unigene200015 SustainPine v3.0 320
AutoFact: MIF4G and MA3 domain-containing protein [Arabidopsis thaliana] gb|AAC63673.1| putative eukaryotic initiation factor 4, eIF4 [Arabidopsis thaliana] gb|AEC07523.1| MIF4G and MA3 domain-containing protein [Arabidopsis thaliana] 3.0e-31
FL-Next: sp=Eukaryotic initiation factor iso-4F subunit p82-34; Triticum aestivum (Wheat). 0.0
Sma3: Translation initiation factor eIF(Iso)4G 6.042e-09
Internal
sp_v3.0_unigene208974 SustainPine v3.0 739
AutoFact: Cyclic phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9S8G6_RICCO 2.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain