Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA metabolic process

Term: GO:0016070  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene37049 SustainPine v3.0 985
AutoFact: putative eukaryotic translation initiation factor 4 gamma [Oryza glaberrima] 1.0e-23
FL-Next: sp=Eukaryotic initiation factor iso-4F subunit p82-34; Triticum aestivum (Wheat). 0.0
Sma3: Translation initiation factor eIF(Iso)4G 4.045e-09
Putative N-terminus
sp_v3.0_unigene37699 SustainPine v3.0 3182
AutoFact: Eukaryotic initiation factor iso4G n=1 Tax=Carica papaya RepID=E3V0I0_CARPA 0.0
FL-Next: sp=Eukaryotic initiation factor iso-4F subunit p82-34; Triticum aestivum (Wheat). 0.0
Sma3: Translation initiation factor eIF(Iso)4G 7.738e-09
Complete
sp_v3.0_unigene42629 SustainPine v3.0 1650
AutoFact: MIF4G domain and MA3 domain-containing protein [Arabidopsis thaliana] dbj|BAD44002.1| unknown protein [Arabidopsis thaliana] dbj|BAE98902.1| hypothetical protein [Arabidopsis thaliana] gb|AED92488.1| MIF4G domain and MA3 domain-containing protein [Arabido 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene42840 SustainPine v3.0 303
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Hippocampus abundant transcript 1 protein, putative 4.916e-10
Internal
sp_v3.0_unigene44324 SustainPine v3.0 623
AutoFact: Major Facilitator Superfamily, putative [Oryza sativa Japonica Group] gb|ABA91455.1| Major Facilitator Superfamily protein, expressed [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Hippocampus abundant transcript 1 protein, putative 5.586e-10
Internal
sp_v3.0_unigene50829 SustainPine v3.0 214
AutoFact: PREDICTED: similar to ATP-dependent helicase n=1 Tax=Vitis vinifera RepID=UPI00019836E3 2.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Helicase, putative 4.12e-09
Internal
sp_v3.0_unigene51956 SustainPine v3.0 397
AutoFact: Major Facilitator Superfamily, putative [Oryza sativa Japonica Group] gb|ABA91455.1| Major Facilitator Superfamily protein, expressed [Oryza sativa Japonica Group] 4.0e-19
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Hippocampus abundant transcript 1 protein, putative 4.09e-10
Internal
sp_v3.0_unigene52154 SustainPine v3.0 455
AutoFact: Cyclic phosphodiesterase n=3 Tax=Andropogoneae RepID=B6U6P0_MAIZE 2.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene58379 SustainPine v3.0 425
AutoFact: Hippocampus abundant transcript 1 protein, putative n=1 Tax=Ricinus communis RepID=B9SG69_RICCO 5.0e-34
FL-Next: tr=Hippocampus abundant transcript 1 protein, putative; Ricinus communis (Castor bean). 0.0
Sma3: Hippocampus abundant transcript 1 protein, putative 5.586e-10
N-terminus
sp_v3.0_unigene59120 SustainPine v3.0 366
AutoFact: PPR domain containing protein 2.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 2.393e-11
N-terminus
sp_v3.0_unigene61053 SustainPine v3.0 213
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9STP1_RICCO 7.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide (PPR) repeat-containing protein-like 1.556e-11
Internal
sp_v3.0_unigene61090 SustainPine v3.0 201
AutoFact: putative pre-mRNA-splicing factor cwc-22 [Oryza sativa Indica Group] 4.0e-21
FL-Next: tr=Os11g0151600 protein; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene61187 SustainPine v3.0 305
AutoFact: putative eukaryotic translation initiation factor 4 gamma [Oryza sativa Indica Group] 8.0e-27
FL-Next: sp=Eukaryotic initiation factor iso-4F subunit p82-34; Triticum aestivum (Wheat). 0.0
Sma3: Translation initiation factor eIF(Iso)4G 6.505e-09
Internal
sp_v3.0_unigene64271 SustainPine v3.0 212
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene64593 SustainPine v3.0 175
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 4.032e-14
Internal
sp_v3.0_unigene70517 SustainPine v3.0 209
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 1.153e-07
Internal
sp_v3.0_unigene72131 SustainPine v3.0 282
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9STP1_RICCO 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 6.545e-18
Internal
sp_v3.0_unigene76716 SustainPine v3.0 275
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene76873 SustainPine v3.0 193
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230 gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] 2.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 4.698e-13
Internal
sp_v3.0_unigene77330 SustainPine v3.0 436
AutoFact: Type III restriction enzyme, res subunit [Anabaena variabilis ATCC 29413] gb|ABA22513.1| Type III restriction enzyme, res subunit [Anabaena variabilis ATCC 29413] 9.00054e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Helicase, putative 8.404e-12
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain