Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleoid

Term: GO:0009295  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene71401 SustainPine v3.0 198
• AutoFact: Fructokinase-like 1 n=2 Tax=Arabidopsis RepID=Q9M394_ARATH 7.0e-07
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
C-terminus
sp_v3.0_unigene72321 SustainPine v3.0 177
• AutoFact: putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; 54319-51679 [Arabidopsis thaliana] 1.0e-07
• FL-Next: tr=Putative UDP-N-acetylmuramoylanalyl-D-glutamate-2-6-diaminoligase; Raphanus sativus (Radish). 0.0
C-terminus
sp_v3.0_unigene93634 SustainPine v3.0 817
• AutoFact: putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; 54319-51679 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
C-terminus
sp_v3.0_unigene93791 SustainPine v3.0 1497
• AutoFact: DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Nicotiana benthamiana RepID=GYRA_NICBE 0.0
• FL-Next: sp=DNA gyrase subunit A, chloroplastic/mitochondrial; Nicotiana benthamiana. 0.0
• Sma3: Probable DNA gyrase subunit A, chloroplastic/mitochondrial 7.399e-09
N-terminus
sp_v3.0_unigene94894 SustainPine v3.0 1766
• AutoFact: Elongation factor Tu n=4 Tax=Oryza sativa RepID=Q6ZI53_ORYSJ 0.0
• FL-Next: sp=Elongation factor Tu; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor Tu 0.0
C-terminus
sp_v3.0_unigene100210 SustainPine v3.0 485
• AutoFact: Fructokinase-like protein 1 n=2 Tax=Nicotiana RepID=D9IWN9_NICBE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative fructokinase 2.621e-08
C-terminus
sp_v3.0_unigene110760 SustainPine v3.0 280
• AutoFact: Superoxide dismutase n=3 Tax=Ralstonia RepID=C6BCI5_RALP1 1.0e-11
• FL-Next: sp=Superoxide dismutase; Pinus pinaster (Maritime pine). 0.0
• Sma3: Superoxide dismutase 1.446e-12
Putative N-terminus
sp_v3.0_unigene121328 SustainPine v3.0 196
• AutoFact: MurE synthetase n=1 Tax=Physcomitrella patens subsp. patens RepID=Q3LHI5_PHYPA 3.0e-25
• FL-Next: tr=MurE synthetase; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene125799 SustainPine v3.0 272
• AutoFact: Fructokinase, putative n=1 Tax=Ricinus communis RepID=B9SPF8_RICCO 1.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative fructokinase 1.825e-08
Internal
sp_v3.0_unigene128589 SustainPine v3.0 511
• AutoFact: Translation elongation factor-TU (Fragment) n=1 Tax=Glycine max RepID=O23962_SOYBN 4.0e-10
• FL-Next: sp=Elongation factor Tu; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: EF-Tu 0.0
C-terminus
sp_v3.0_unigene141113 SustainPine v3.0 503
• AutoFact: 50S ribosomal protein L12, chloroplastic n=3 Tax=Nicotiana RepID=RK12_NICSY 1.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 50S ribosomal protein L12, chloroplastic 2.417e-29
C-terminus
sp_v3.0_unigene150649 SustainPine v3.0 372
• AutoFact: Elongation factor Tu n=1 Tax=alpha proteobacterium BAL199 RepID=A8TWG4_9PROT 0.0
• FL-Next: sp=Elongation factor Tu; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor Tu 0.0
Putative C-terminus
sp_v3.0_unigene151540 SustainPine v3.0 219
• AutoFact: Elongation factor Tu n=4 Tax=Betaproteobacteria RepID=EFTU_AROAE 5.0e-33
• FL-Next: sp=Elongation factor Tu; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: EF-Tu 0.0
Putative C-terminus
sp_v3.0_unigene151812 SustainPine v3.0 543
• AutoFact: Topoisomerase IV subunit A n=1 Tax=gamma proteobacterium HdN1 RepID=E1VHZ0_9GAMM 0.0
• FL-Next: sp=DNA gyrase subunit A, chloroplastic/mitochondrial; Nicotiana benthamiana. 0.0
• Sma3: Probable DNA gyrase subunit A, chloroplastic/mitochondrial 7.399e-09
Internal
sp_v3.0_unigene152397 SustainPine v3.0 351
• AutoFact: Elongation factor Tu (Fragment) n=1 Tax=Flavobacterium johnsoniae RepID=D1MWP0_FLAJO 0.0
• FL-Next: sp=Elongation factor Tu; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor Tu 0.0
Internal
sp_v3.0_unigene152521 SustainPine v3.0 507
• AutoFact: Translation elongation factor 1A (EF-1A/EF-Tu) n=1 Tax=Fluviicola taffensis DSM 16823 RepID=F2I9Y1_FLUTR 0.0
• FL-Next: sp=Elongation factor Tu; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor Tu 0.0
Internal
sp_v3.0_unigene153738 SustainPine v3.0 549
• AutoFact: Superoxide dismutase n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SIP7_METPP 0.0
• FL-Next: sp=Superoxide dismutase; Pinus pinaster (Maritime pine). 0.0
• Sma3: Superoxide dismutase 0.0
C-terminus
sp_v3.0_unigene154405 SustainPine v3.0 493
• AutoFact: Superoxide dismutase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EWL0_SORC5 9.00054e-42
• FL-Next: sp=Superoxide dismutase; Pinus pinaster (Maritime pine). 0.0
• Sma3: Superoxide dismutase 0.0
C-terminus
sp_v3.0_unigene154429 SustainPine v3.0 394
• AutoFact: mitochondrial DNA polymerase A [Dictyostelium discoideum AX4] gb|AAO12053.1| mitochondrial DNA polymerase A [Dictyostelium discoideum] gb|EAL73185.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4] 6.0e-33
• FL-Next: tr=DNA polymerase I; Nannochloropsis gaditana CCMP526. 0.0
• Sma3: Putative PolI-like DNA polymerase 2.668e-08
Internal
sp_v3.0_unigene154636 SustainPine v3.0 527
• AutoFact: Elongation factor Tu n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIC7_HALO1 0.0
• FL-Next: sp=Elongation factor Tu; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor Tu 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain