Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: gene silencing by RNA

Term: GO:0031047  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene690 SustainPine v3.0 2701
AutoFact: Protein SUPPRESSOR OF GENE SILENCING 3 n=1 Tax=Solanum lycopersicum RepID=SGS3_SOLLC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein SUPPRESSOR OF GENE SILENCING 3 homolog 4.169e-09
Complete
sp_v3.0_unigene7823 SustainPine v3.0 2688
AutoFact: protein SUPPRESSOR OF GENE SILENCING 3 homolog [Zea mays] sp|A1Y2B7.1|SGS3_MAIZE RecName: Full=Protein SUPPRESSOR OF GENE SILENCING 3 homolog; AltName: Full=Protein LEAFBLADELESS 1; AltName: Full=ZmSGS3 gb|ABH10613.1| leafbladeless1 [Zea mays] gb|ACN33294 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein SUPPRESSOR OF GENE SILENCING 3 homolog 2.783e-09
Complete
sp_v3.0_unigene14065 SustainPine v3.0 888
AutoFact: Protein SUPPRESSOR OF GENE SILENCING 3 n=1 Tax=Solanum lycopersicum RepID=SGS3_SOLLC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein SUPPRESSOR OF GENE SILENCING 3 2.694e-09
Putative C-terminus
sp_v3.0_unigene21929 SustainPine v3.0 1821
AutoFact: protein SUPPRESSOR OF GENE SILENCING 3 homolog [Zea mays] sp|A1Y2B7.1|SGS3_MAIZE RecName: Full=Protein SUPPRESSOR OF GENE SILENCING 3 homolog; AltName: Full=Protein LEAFBLADELESS 1; AltName: Full=ZmSGS3 gb|ABH10613.1| leafbladeless1 [Zea mays] gb|ACN33294 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein SUPPRESSOR OF GENE SILENCING 3 homolog 2.522e-09
C-terminus
sp_v3.0_unigene35063 SustainPine v3.0 640
AutoFact: Protein SUPPRESSOR OF GENE SILENCING 3 homolog n=2 Tax=Oryza sativa RepID=SGS3_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein SUPPRESSOR OF GENE SILENCING 3 2.694e-09
Internal
sp_v3.0_unigene35221 SustainPine v3.0 827
AutoFact: Suppressor of gene silencing 3 protein (Fragment) n=1 Tax=Picea abies RepID=B2KZJ3_PICAB 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein SUPPRESSOR OF GENE SILENCING 3 2.121e-09
N-terminus
sp_v3.0_unigene44431 SustainPine v3.0 1178
AutoFact: Protein SUPPRESSOR OF GENE SILENCING 3 homolog n=2 Tax=Oryza sativa RepID=SGS3_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein SUPPRESSOR OF GENE SILENCING 3 2.953e-09
Putative C-terminus
sp_v3.0_unigene48998 SustainPine v3.0 292
AutoFact: Suppressor of gene silencing 3 protein (Fragment) n=1 Tax=Picea abies RepID=B2KZJ3_PICAB 2.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein SUPPRESSOR OF GENE SILENCING 3 1.616e-09
Internal
sp_v3.0_unigene49084 SustainPine v3.0 260
AutoFact: rgd1, SGS3, lbl1; ragged seedling1 2.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein SUPPRESSOR OF GENE SILENCING 3 1.656e-09
Internal
sp_v3.0_unigene60704 SustainPine v3.0 170
AutoFact: [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 8.0e-07
FL-Next: sp=DNA repair and recombination protein RAD54; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: ATP-dependent helicase, putative 7.066e-08
Internal
sp_v3.0_unigene93573 SustainPine v3.0 2338
AutoFact: Protein SUPPRESSOR OF GENE SILENCING 3 n=1 Tax=Solanum lycopersicum RepID=SGS3_SOLLC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein SUPPRESSOR OF GENE SILENCING 3 3.06e-09
Putative Complete
sp_v3.0_unigene93626 SustainPine v3.0 2379
AutoFact: protein SUPPRESSOR OF GENE SILENCING 3 homolog [Zea mays] sp|A1Y2B7.1|SGS3_MAIZE RecName: Full=Protein SUPPRESSOR OF GENE SILENCING 3 homolog; AltName: Full=Protein LEAFBLADELESS 1; AltName: Full=ZmSGS3 gb|ABH10613.1| leafbladeless1 [Zea mays] gb|ACN33294 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein SUPPRESSOR OF GENE SILENCING 3 3.006e-09
Putative Complete
sp_v3.0_unigene99259 SustainPine v3.0 712
AutoFact: protein SUPPRESSOR OF GENE SILENCING 3 [Arabidopsis thaliana] sp|Q9LDX1.1|SGS3_ARATH RecName: Full=Protein SUPPRESSOR OF GENE SILENCING 3; Short=AtSGS3 gb|AAF73960.1| SGS3 [Arabidopsis thaliana] dbj|BAA97244.1| unnamed protein product [Arabidopsis thalian 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein SUPPRESSOR OF GENE SILENCING 3 1.426e-09
Internal
sp_v3.0_unigene122674 SustainPine v3.0 472
AutoFact: Chromatin remodeling 38 n=5 Tax=Camelineae RepID=Q9M297_ARATH 3.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene126110 SustainPine v3.0 217
AutoFact: rgd1, SGS3, lbl1; ragged seedling1 2.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein SUPPRESSOR OF GENE SILENCING 3 2.258e-09
Internal
sp_v3.0_unigene184121 SustainPine v3.0 501
AutoFact: rgd1, SGS3, lbl1; ragged seedling1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein SUPPRESSOR OF GENE SILENCING 3 2.953e-09
Internal
sp_v3.0_unigene191235 SustainPine v3.0 206
AutoFact: protein SUPPRESSOR OF GENE SILENCING 3 homolog [Zea mays] sp|A1Y2B7.1|SGS3_MAIZE RecName: Full=Protein SUPPRESSOR OF GENE SILENCING 3 homolog; AltName: Full=Protein LEAFBLADELESS 1; AltName: Full=ZmSGS3 gb|ABH10613.1| leafbladeless1 [Zea mays] gb|ACN33294 1.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein SUPPRESSOR OF GENE SILENCING 3 homolog 9.491e-10
Internal
sp_v3.0_unigene195195 SustainPine v3.0 533
AutoFact: Chromatin remodeling 38 n=5 Tax=Camelineae RepID=Q9M297_ARATH 3.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 3.305e-08
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain