Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromosome organization

Term: GO:0051276  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene490 SustainPine v3.0 2865
AutoFact: structural maintenance of chromosomes 1 protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene2051 SustainPine v3.0 4296
AutoFact: pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_51, whole genome shotgun sequence 4.581e-08
Complete
sp_v3.0_unigene2329 SustainPine v3.0 1129
AutoFact: pfam10174, Cast, RIM-binding protein of the cytomatrix active zone 7.0e-07
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: SMC-like protein 1.111e-09
Internal
sp_v3.0_unigene4718 SustainPine v3.0 389
AutoFact: ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana] sp|Q9FT73.1|RQL2_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 2; AltName: Full=RecQ-like protein 2; Short=AtRecQ2; Short=AtRecQl2 emb|CAC14866.1| DNA Helicase [Arabidopsis thaliana] gb|AE 2.0e-39
FL-Next: sp=Mediator of RNA polymerase II transcription subunit 34; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent DNA helicase, RecQ family protein, expressed 5.767e-11
Internal
sp_v3.0_unigene5813 SustainPine v3.0 1075
AutoFact: pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.0
FL-Next: sp=Structural maintenance of chromosomes protein 2-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SMC3 protein 4.107e-09
N-terminus
sp_v3.0_unigene7237 SustainPine v3.0 2151
AutoFact: SMC_N multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SMC3 protein 3.564e-09
Putative Complete
sp_v3.0_unigene9429 SustainPine v3.0 844
AutoFact: SMC_hinge multi-domain protein 2.0e-19
FL-Next: sp=MAR-binding filament-like protein 1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Sma3: SMC3 protein 1.945e-09
Internal
sp_v3.0_unigene11164 SustainPine v3.0 1495
AutoFact: putative SMC protein [Oryza sativa Japonica Group] gb|EEC79459.1| hypothetical protein OsI_20467 [Oryza sativa Indica Group] gb|EEE64226.1| hypothetical protein OsJ_19059 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Structural maintenance of chromosomes protein 4 1.736e-09
Internal
sp_v3.0_unigene12183 SustainPine v3.0 1484
AutoFact: structural maintenance of chromosomes (SMC) - like protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Condensin complex component 1.047e-07
N-terminus
sp_v3.0_unigene12608 SustainPine v3.0 795
AutoFact: ATP-dependent DNA helicase Q-like 3 n=2 Tax=Arabidopsis thaliana RepID=RQL3_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP-dependent DNA helicase, RecQ family protein, expressed 3.136e-14
Internal
sp_v3.0_unigene12633 SustainPine v3.0 4218
AutoFact: putative SMC protein [Oryza sativa Japonica Group] gb|EEC79459.1| hypothetical protein OsI_20467 [Oryza sativa Indica Group] gb|EEE64226.1| hypothetical protein OsJ_19059 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Structural maintenance of chromosomes protein 4 2.544e-09
Complete
sp_v3.0_unigene13697 SustainPine v3.0 994
AutoFact: SMC-like protein [Arabidopsis thaliana] gb|AAD54770.1|AF120933_1 SMC-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: SMC-like protein 2.873e-09
C-terminus
sp_v3.0_unigene37484 SustainPine v3.0 716
AutoFact: Cast multi-domain protein 2.0e-06
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene40706 SustainPine v3.0 979
AutoFact: PREDICTED: similar to Os07g0681600 n=1 Tax=Vitis vinifera RepID=UPI00019834DE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA Helicase 5.744e-14
Internal
sp_v3.0_unigene41207 SustainPine v3.0 367
AutoFact: Structural maintenance of chromosomes protein 4 n=2 Tax=Arabidopsis thaliana RepID=SMC4_ARATH 7.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Structural maintenance of chromosomes protein 4 2.304e-09
C-terminus
sp_v3.0_unigene44382 SustainPine v3.0 1524
AutoFact: putative DNA helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA Helicase 4.028e-21
C-terminus
sp_v3.0_unigene52594 SustainPine v3.0 231
AutoFact: Unassigned protein
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene57032 SustainPine v3.0 374
AutoFact: PREDICTED: similar to leucine zipper protein, partial [Strongylocentrotus purpuratus] ref|XP_001189267.1| PREDICTED: similar to leucine zipper protein, partial [Strongylocentrotus purpuratus] 4.0e-06
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: SMC3 protein 7.054e-10
Internal
sp_v3.0_unigene57206 SustainPine v3.0 185
AutoFact: putative SMC protein [Oryza sativa Japonica Group] gb|EEC79459.1| hypothetical protein OsI_20467 [Oryza sativa Indica Group] gb|EEE64226.1| hypothetical protein OsJ_19059 [Oryza sativa Japonica Group] 2.0e-22
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Structural maintenance of chromosomes protein 4 2.848e-09
Internal
sp_v3.0_unigene60882 SustainPine v3.0 213
AutoFact: Unassigned protein
FL-Next: tr=Structural maintenance of chromosome, putative; Ricinus communis (Castor bean). 0.0
Sma3: SMC3 protein 1.05e-09
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain