Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromosome organization

Term: GO:0051276  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene61569 SustainPine v3.0 325
AutoFact: Unassigned protein
FL-Next: sp=Structural maintenance of chromosomes protein; Selaginella moellendorffii (Spikemoss). 0.0
Internal
sp_v3.0_unigene72476 SustainPine v3.0 284
AutoFact: putative SMC protein [Oryza sativa Japonica Group] gb|EEC79459.1| hypothetical protein OsI_20467 [Oryza sativa Indica Group] gb|EEE64226.1| hypothetical protein OsJ_19059 [Oryza sativa Japonica Group] 7.0e-18
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene79173 SustainPine v3.0 231
AutoFact: Structural maintenance of chromosomes protein 4 n=2 Tax=Arabidopsis thaliana RepID=SMC4_ARATH 7.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Structural maintenance of chromosomes protein 4 2.745e-09
Internal
sp_v3.0_unigene94218 SustainPine v3.0 314
AutoFact: RecQ-like helicase 2 [Oryza sativa Japonica Group] 9.80909e-45
FL-Next: Isoform 2 of Mediator of RNA polymerase II transcription subunit 34 OS=Arabidopsis thaliana GN=MED34 0.0
Sma3: DNA Helicase 1.082e-17
Internal
sp_v3.0_unigene96401 SustainPine v3.0 695
AutoFact: ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana] sp|Q9FT73.1|RQL2_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 2; AltName: Full=RecQ-like protein 2; Short=AtRecQ2; Short=AtRecQl2 emb|CAC14866.1| DNA Helicase [Arabidopsis thaliana] gb|AE 2.94273e-44
FL-Next: sp=Mediator of RNA polymerase II transcription subunit 34; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent DNA helicase, RecQ family protein, expressed 5.047e-11
N-terminus
sp_v3.0_unigene98663 SustainPine v3.0 455
AutoFact: DNA helicase hus2, putative n=1 Tax=Ricinus communis RepID=B9SXG0_RICCO 2.0e-22
FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene98805 SustainPine v3.0 473
AutoFact: OmpH multi-domain protein 3.0e-05
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene103978 SustainPine v3.0 315
AutoFact: Protein MIM n=3 Tax=Arabidopsis RepID=Q9FII7_ARATH 8.99999e-40
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Sma3: SMC-like protein 1.54e-09
Internal
sp_v3.0_unigene104254 SustainPine v3.0 954
AutoFact: putative DNA helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA Helicase 2.996e-17
Putative C-terminus
sp_v3.0_unigene118295 SustainPine v3.0 270
AutoFact: DNA Helicase [Arabidopsis thaliana] 2.0e-23
FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA Helicase 5.61e-08
Internal
sp_v3.0_unigene120981 SustainPine v3.0 369
AutoFact: DNA Helicase [Arabidopsis thaliana] 0.0
FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA helicase isolog 1.083e-08
Internal
sp_v3.0_unigene127991 SustainPine v3.0 1226
AutoFact: Phosphoglycerate kinase n=1 Tax=Picea sitchensis RepID=B8LKQ1_PICSI 0.0
FL-Next: sp=Phosphoglycerate kinase; Pinus pinaster (Maritime pine). 0.0
Sma3: Phosphoglycerate kinase 0.0
Putative C-terminus
sp_v3.0_unigene149117 SustainPine v3.0 237
AutoFact: Structural maintenance of chromosomes protein 4 n=2 Tax=Arabidopsis thaliana RepID=SMC4_ARATH 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene151726 SustainPine v3.0 352
AutoFact: Structural maintenance of chromosomes protein 1A n=1 Tax=Ascaris suum RepID=F1KRD4_ASCSU 2.0e-24
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene151980 SustainPine v3.0 274
AutoFact: Structural maintenance of chromosomes 1-like 1 (Fragment) n=2 Tax=Microtus RepID=D5KWP1_MICAR 2.0e-27
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Condensin complex component 8.716e-08
N-terminus
sp_v3.0_unigene153318 SustainPine v3.0 508
AutoFact: Structural maintenance of chromosomes protein 3 n=50 Tax=Euteleostomi RepID=SMC3_HUMAN 0.0
FL-Next: sp=Structural maintenance of chromosomes protein 2-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SMC3 protein 3.168e-09
N-terminus
sp_v3.0_unigene154721 SustainPine v3.0 336
AutoFact: Structural maintenance of chromosomes protein 4, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NXB1_PHYIT 4.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Structural maintenance of chromosomes protein 4 2.304e-09
Putative C-terminus
sp_v3.0_unigene156029 SustainPine v3.0 449
AutoFact: Cohesin complex subunit psm1 n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NBC9_COPC7 1.00053e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Condensin complex component 4.636e-08
Internal
sp_v3.0_unigene159067 SustainPine v3.0 370
AutoFact: PREDICTED: structural maintenance of chromosomes protein 3 [Apis mellifera] 5.0e-14
FL-Next: tr=Condensin complex component SMC3; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene159556 SustainPine v3.0 435
AutoFact: structural maintenance of chromosomes protein 2-2 [Arabidopsis thaliana] sp|Q9SN90.1|SMC22_ARATH RecName: Full=Structural maintenance of chromosomes protein 2-2; Short=AtSMC2-2; AltName: Full=Chromosome-associated protein E-2; Short=AtCAP-E2 emb|CAB61972. 1.0e-24
FL-Next: sp=Structural maintenance of chromosomes protein 2-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Condensin complex components subunit 4.493e-08
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain