Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: base-excision repair

Term: GO:0006284  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene106675 SustainPine v3.0 223
AutoFact: transcriptional activator DEMETER [Arabidopsis thaliana] sp|Q8LK56.2|DME_ARATH RecName: Full=Transcriptional activator DEMETER; AltName: Full=DNA glycosylase-related protein DME gb|ABC61677.1| DNA glycosylase DEMETER [Arabidopsis thaliana] gb|AED90761.1| 2.0e-20
FL-Next: Isoform 1 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
Sma3: Repressor of silencing 1 9.835e-09
Internal
sp_v3.0_unigene107477 SustainPine v3.0 99
AutoFact: Uracil-DNA glycosylase n=1 Tax=Picea sitchensis RepID=D5ADR8_PICSI 4.0e-10
FL-Next: sp=Uracil-DNA glycosylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Uracil-DNA glycosylase 6.697e-20
Internal
sp_v3.0_unigene129852 SustainPine v3.0 245
AutoFact: putative formamidopyrimidine-DNA glycosylase 1 [Arabidopsis thaliana] 9.0e-24
FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Sma3: Putative formamidopyrimidine-DNA glycosylase 1 6.195e-09
Internal
sp_v3.0_unigene130976 SustainPine v3.0 281
AutoFact: DNA-3-methyladenine glycosylase, putative n=1 Tax=Ricinus communis RepID=B9S6F5_RICCO 8.0e-27
FL-Next: tr=DNA-3-methyladenine glycosylase, putative; Ricinus communis (Castor bean). 0.0
Sma3: DNA-3-methyladenine glycosylase, putative 9.494e-08
Putative C-terminus
sp_v3.0_unigene149298 SustainPine v3.0 278
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q338J6_ORYSJ 4.0e-21
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Sma3: Retrotransposon protein, putative, unclassified 5.954e-10
Internal
sp_v3.0_unigene151063 SustainPine v3.0 317
AutoFact: PREDICTED: nuclear cap-binding protein subunit 2-like n=1 Tax=Meleagris gallopavo RepID=UPI0002035C1F 1.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear cap-binding protein 3.771e-11
Internal
sp_v3.0_unigene152050 SustainPine v3.0 195
AutoFact: Ubiquitin carrier protein n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9C433_9EUKA 4.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carrier protein 0.0
Internal
sp_v3.0_unigene152077 SustainPine v3.0 457
AutoFact: Ubiquitin carrier protein n=2 Tax=Dictyosteliida RepID=D3BQS8_POLPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carrier protein 4.316e-43
C-terminus
sp_v3.0_unigene152783 SustainPine v3.0 570
AutoFact: ubiquitin-conjugating enzyme family protein [Entamoeba histolytica HM-1:IMSS] gb|EAL42926.1| ubiquitin-conjugating enzyme family protein [Entamoeba histolytica HM-1:IMSS] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carrier protein 6.73e-36
Complete
sp_v3.0_unigene155532 SustainPine v3.0 335
AutoFact: Gag-Pol n=1 Tax=Ipomoea batatas RepID=Q6BCY1_IPOBA 5.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 5.652e-17
Internal
sp_v3.0_unigene155701 SustainPine v3.0 390
AutoFact: Endonuclease III homolog n=1 Tax=Schizosaccharomyces pombe 972h- RepID=NTH1_SCHPO 1.0e-36
FL-Next: tr=Predicted protein; Ostreococcus lucimarinus (strain CCE9901). 0.0
Internal
sp_v3.0_unigene164424 SustainPine v3.0 390
AutoFact: putative pol polyprotein [Brassica oleracea var. botrytis] 7.0e-26
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Copia-type polyprotein 1.544e-11
Putative C-terminus
sp_v3.0_unigene164450 SustainPine v3.0 319
AutoFact: Seven trans-membrane protein n=1 Tax=Triticum aestivum RepID=E2RZR5_WHEAT 3.9937e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Mlo family protein 7.852e-33
Internal
sp_v3.0_unigene183075 SustainPine v3.0 637
AutoFact: ubiquitin-conjugating enzyme family protein [Entamoeba histolytica HM-1:IMSS] gb|EAL42926.1| ubiquitin-conjugating enzyme family protein [Entamoeba histolytica HM-1:IMSS] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carrier protein 6.378e-36
Complete
sp_v3.0_unigene183467 SustainPine v3.0 722
AutoFact: Os02g0774500 protein n=3 Tax=Oryza sativa RepID=Q0DX49_ORYSJ 6.0e-38
FL-Next: sp=DNA-3-methyladenine glycosylase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-3-methyladenine glycosylase 7.054e-10
C-terminus
sp_v3.0_unigene184508 SustainPine v3.0 507
AutoFact: PREDICTED: cap binding protein 20-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBB931 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear cap-binding protein 4.622e-11
N-terminus
sp_v3.0_unigene193968 SustainPine v3.0 570
AutoFact: Integrase n=1 Tax=Boechera divaricarpa RepID=B6REL8_9BRAS 2.0e-39
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.18e-18
C-terminus
sp_v3.0_unigene206356 SustainPine v3.0 755
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y141_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.917e-22
Internal
sp_v3.0_unigene206473 SustainPine v3.0 591
AutoFact: rve domain containing protein 3.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.12e-30
Internal
sp_v3.0_unigene207246 SustainPine v3.0 532
AutoFact: Putative gag-pol polyprotein (Fragment) n=1 Tax=Picea abies RepID=B2KZG9_PICAB 3.0e-39
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, unclassified 4.779e-13
C-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain