Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: base-excision repair

Term: GO:0006284  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene67302 SustainPine v3.0 190
AutoFact: DNA glycosylase n=2 Tax=Populus trichocarpa RepID=B9HW11_POPTR 5.0e-21
FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
Sma3: Repressor of silencing 1 1.725e-08
Internal
sp_v3.0_unigene72796 SustainPine v3.0 156
AutoFact: Ubiquitin carrier protein (Fragment) n=2 Tax=Magnoliophyta RepID=Q677E9_HYAOR 7.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carrier protein 2.542e-19
Internal
sp_v3.0_unigene74220 SustainPine v3.0 414
AutoFact: methyl-CpG-binding domain protein 4 [Arabidopsis thaliana] gb|AEE74622.1| methyl-CpG-binding domain protein 4 [Arabidopsis thaliana] 1.0e-15
FL-Next: tr=Methyl-CpG-binding domain protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene76940 SustainPine v3.0 140
AutoFact: Endonuclease III, putative n=1 Tax=Ricinus communis RepID=B9T798_RICCO 7.0e-10
FL-Next: tr=Endonuclease III, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene77193 SustainPine v3.0 153
AutoFact: Unassigned protein
FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
Sma3: Repressor of silencing 1 1.284e-08
Internal
sp_v3.0_unigene78356 SustainPine v3.0 208
AutoFact: Ubiquitin carrier protein n=2 Tax=Pucciniales RepID=E3JRY6_PUCGT 1.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carrier protein 3.762e-13
Putative Complete
sp_v3.0_unigene94540 SustainPine v3.0 610
AutoFact: H0311C03.4 protein n=2 Tax=Oryza sativa RepID=Q01I90_ORYSA 2.0e-31
FL-Next: tr=Putative uncharacterized protein Sb06g021680; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Sma3: DNA-3-methyladenine glycosylase, putative 4.098e-15
Internal
sp_v3.0_unigene95185 SustainPine v3.0 846
AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.056e-19
Internal
sp_v3.0_unigene95645 SustainPine v3.0 1295
AutoFact: DNA-3-methyladenine glycosylase, putative n=1 Tax=Ricinus communis RepID=B9SWJ1_RICCO 0.0
FL-Next: sp=DNA-3-methyladenine glycosylase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-3-methyladenine glycosylase 7.054e-10
Putative Complete
sp_v3.0_unigene95691 SustainPine v3.0 550
AutoFact: Uracil-DNA glycosylase n=1 Tax=Picea sitchensis RepID=D5ADR8_PICSI 1.0e-24
FL-Next: sp=Uracil-DNA glycosylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Uracil-DNA glycosylase 1.212e-27
C-terminus
sp_v3.0_unigene96890 SustainPine v3.0 522
AutoFact: HhH-GPD domain containing protein 5.0e-11
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
C-terminus
sp_v3.0_unigene98597 SustainPine v3.0 684
AutoFact: Os07g0434200 protein (Fragment) n=2 Tax=Oryza sativa RepID=Q0D6W3_ORYSJ 2.0e-29
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Sma3: Retrotransposon protein, putative, unclassified 3.519e-11
C-terminus
sp_v3.0_unigene100637 SustainPine v3.0 343
AutoFact: 8-oxoguanine DNA glycosylase [Populus nigra] 4.0e-14
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Sma3: 8-oxoguanine DNA glycosylase 4.703e-10
Internal
sp_v3.0_unigene100684 SustainPine v3.0 227
AutoFact: 8-oxoguanine DNA glycosylase [Populus nigra] 4.0e-22
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: 8-oxoguanine DNA glycosylase 2.032e-09
Internal
sp_v3.0_unigene101224 SustainPine v3.0 419
AutoFact: Nuclear cap-binding protein subunit 2 n=2 Tax=Arabidopsis RepID=NCBP2_ARATH 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear cap-binding protein 4.509e-11
Internal
sp_v3.0_unigene101738 SustainPine v3.0 397
AutoFact: endonuclease III homologue [Oryza sativa Japonica Group] gb|AAX96333.1| endonuclease III homologue [Oryza sativa Japonica Group] gb|EEC67986.1| hypothetical protein OsI_35754 [Oryza sativa Indica Group] gb|EEE51951.1| hypothetical protein OsJ_33589 [Oryza 5.0e-16
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
C-terminus
sp_v3.0_unigene103111 SustainPine v3.0 513
AutoFact: Transcriptional activator DEMETER n=2 Tax=Arabidopsis thaliana RepID=DME_ARATH 3.0e-27
FL-Next: Isoform 1 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
Sma3: Repressor of silencing 1 1.103e-08
Internal
sp_v3.0_unigene103358 SustainPine v3.0 667
AutoFact: Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 5.419e-26
Putative C-terminus
sp_v3.0_unigene103573 SustainPine v3.0 749
AutoFact: HhH-GPD domain containing protein 6.0e-16
FL-Next: sp=Protein ROS1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA glycosylase 2.265e-10
Internal
sp_v3.0_unigene105898 SustainPine v3.0 373
AutoFact: Hcr2-0B n=1 Tax=Solanum lycopersicum RepID=Q9ZTJ9_SOLLC 4.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain