Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: base-excision repair

Term: GO:0006284  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene26027 SustainPine v3.0 822
AutoFact: Endonuclease III, putative n=1 Tax=Ricinus communis RepID=B9T798_RICCO 1.4013e-45
FL-Next: tr=Endonuclease III, putative; Ricinus communis (Castor bean). 0.0
N-terminus
sp_v3.0_unigene35200 SustainPine v3.0 1656
AutoFact: HhH-GPD base excision DNA repair protein-related-like [Oryza sativa Japonica Group] dbj|BAD37897.1| HhH-GPD base excision DNA repair protein-related-like [Oryza sativa Japonica Group] gb|EEC80299.1| hypothetical protein OsI_22321 [Oryza sativa Indica Grou 0.0
FL-Next: sp=Protein ROS1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene38569 SustainPine v3.0 2834
AutoFact: RVT_2 domain containing protein 1.0e-06
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, unclassified 5.209e-06
Putative C-terminus
sp_v3.0_unigene39494 SustainPine v3.0 513
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, unclassified 2.661e-18
C-terminus
sp_v3.0_unigene39649 SustainPine v3.0 226
AutoFact: Protein ROS1, putative n=1 Tax=Ricinus communis RepID=B9SRG6_RICCO 2.0e-21
FL-Next: sp=DEMETER-like protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene41227 SustainPine v3.0 1077
AutoFact: DNA-3-methyladenine glycosylase, putative n=1 Tax=Ricinus communis RepID=B9SWJ1_RICCO 0.0
FL-Next: sp=DNA-3-methyladenine glycosylase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-3-methyladenine glycosylase 7.054e-10
C-terminus
sp_v3.0_unigene43427 SustainPine v3.0 128
AutoFact: Protein ROS1, putative n=1 Tax=Ricinus communis RepID=B9SRG6_RICCO 7.0e-15
FL-Next: Isoform 1 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
Sma3: Repressor of silencing 1 2.116e-08
Internal
sp_v3.0_unigene45623 SustainPine v3.0 339
AutoFact: DNA glycosylase n=2 Tax=Populus trichocarpa RepID=B9HW11_POPTR 6.99949e-42
FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
Sma3: Repressor of silencing 1 1.526e-08
Internal
sp_v3.0_unigene47062 SustainPine v3.0 444
AutoFact: HhH-GPD domain containing protein 1.0e-12
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Putative C-terminus
sp_v3.0_unigene47517 SustainPine v3.0 916
AutoFact: Similar to gb|U96710 8-oxoguanine DNA-glycosylase from Homo sapiens [Arabidopsis thaliana] 3.0e-37
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: 8-oxoguanine DNA glycosylase 2.643e-09
C-terminus
sp_v3.0_unigene48078 SustainPine v3.0 402
AutoFact: Repressor of silencing 3 n=1 Tax=Nicotiana tabacum RepID=A4PF91_TOBAC 1.0e-22
FL-Next: Isoform 1 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
Sma3: Repressor of silencing 1 1.408e-08
Internal
sp_v3.0_unigene52012 SustainPine v3.0 212
AutoFact: Repressor of silencing 1 n=1 Tax=Nicotiana tabacum RepID=A4PF88_TOBAC 8.0e-30
FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
Sma3: Repressor of silencing 1 1.712e-08
Internal
sp_v3.0_unigene53155 SustainPine v3.0 224
AutoFact: 8-oxoguanine DNA glycosylase [Populus nigra] 6.0e-19
FL-Next: tr=N-glycosylase/DNA lyase; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene53438 SustainPine v3.0 475
AutoFact: Os07g0434200 protein (Fragment) n=2 Tax=Oryza sativa RepID=Q0D6W3_ORYSJ 1.0e-31
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Copia-type polyprotein 7.188e-12
C-terminus
sp_v3.0_unigene57981 SustainPine v3.0 407
AutoFact: Ubiquitin carrier protein (Fragment) n=1 Tax=Vitis vinifera RepID=D7TND2_VITVI 8.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carrier protein 5.69e-15
N-terminus
sp_v3.0_unigene58039 SustainPine v3.0 202
AutoFact: Protein ROS1, putative n=1 Tax=Ricinus communis RepID=B9SRG6_RICCO 1.0e-17
FL-Next: Isoform 1 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
Internal
sp_v3.0_unigene62605 SustainPine v3.0 290
AutoFact: Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Camponotus floridanus RepID=E2AKP5_9HYME 3.0e-23
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, unclassified 3.443e-16
Putative C-terminus
sp_v3.0_unigene64107 SustainPine v3.0 209
AutoFact: Os02g0494700 protein n=2 Tax=Oryza sativa RepID=Q0E138_ORYSJ 5.0e-21
FL-Next: sp=Transcriptional activator DEMETER; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Repressor of silencing 1 2.159e-08
Internal
sp_v3.0_unigene65115 SustainPine v3.0 227
AutoFact: Isoform 2 of Transcriptional activator DEMETER n=1 Tax=Arabidopsis thaliana RepID=Q8LK56-2 6.0e-14
FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
Sma3: Repressor of silencing 1 6.042e-09
Internal
sp_v3.0_unigene66895 SustainPine v3.0 242
AutoFact: Os02g0774500 protein n=3 Tax=Oryza sativa RepID=Q0DX49_ORYSJ 5.0e-23
FL-Next: sp=DNA-3-methyladenine glycosylase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-3-methyladenine glycosylase 7.054e-10
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain