Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: base-excision repair

Term: GO:0006284  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene433 SustainPine v3.0 1887
AutoFact: Methyladenine glycosylase protein-like n=3 Tax=Oryza sativa RepID=Q67UR6_ORYSJ 0.0
FL-Next: tr=Methyladenine glycosylase protein-like protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Sma3: DNA-3-methyladenine glycosylase, putative 1.225e-18
Complete
sp_v3.0_unigene878 SustainPine v3.0 1323
AutoFact: DEMETER protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Transcriptional activator DEMETER; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Repressor of silencing 1 6.505e-09
C-terminus
sp_v3.0_unigene4326 SustainPine v3.0 822
AutoFact: transcriptional activator DEMETER [Arabidopsis thaliana] sp|Q8LK56.2|DME_ARATH RecName: Full=Transcriptional activator DEMETER; AltName: Full=DNA glycosylase-related protein DME gb|ABC61677.1| DNA glycosylase DEMETER [Arabidopsis thaliana] gb|AED90761.1| 2.0e-11
FL-Next: Isoform 1 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
Sma3: Putative transcriptional activator DEMETER 4.891e-09
Internal
sp_v3.0_unigene4888 SustainPine v3.0 180
AutoFact: Unassigned protein
FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
Sma3: Repressor of silencing 1 9.077e-09
Internal
sp_v3.0_unigene5504 SustainPine v3.0 1404
AutoFact: DNA-3-methyladenine glycosylase II [Arabidopsis thaliana] emb|CAB42917.1| putative DNA-3-methyladenine glycosidase [Arabidopsis thaliana] dbj|BAC43662.1| putative DNA-3-methyladenine glycosidase [Arabidopsis thaliana] gb|AAO63339.1| At3g50880 [Arabidopsis 0.0
FL-Next: tr=HhH-GPD base excision DNA repair family protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Sma3: DNA-3-methyladenine glycosylase, putative 1.014e-07
Complete
sp_v3.0_unigene5683 SustainPine v3.0 2180
AutoFact: DNA-3-methyladenine glycosylase I [Arabidopsis thaliana] dbj|BAB08821.1| unnamed protein product [Arabidopsis thaliana] gb|AAO41948.1| unknown protein [Arabidopsis thaliana] gb|AAO50465.1| unknown protein [Arabidopsis thaliana] gb|AED95146.1| DNA-3-methyl 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Sma3: DNA-3-methyladenine glycosylase, putative 3.912e-19
Complete
sp_v3.0_unigene6947 SustainPine v3.0 999
AutoFact: Uracil-DNA glycosylase n=1 Tax=Picea sitchensis RepID=D5ADR8_PICSI 0.0
FL-Next: sp=Uracil-DNA glycosylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Uracil-DNA glycosylase 6.191e-36
N-terminus
sp_v3.0_unigene7631 SustainPine v3.0 1779
AutoFact: putative GTP-binding protein [Arabidopsis thaliana] emb|CAB87708.1| putative GTP-binding protein [Arabidopsis thaliana] gb|AAL25554.1| AT5g11480/F15N18_70 [Arabidopsis thaliana] gb|AAN28859.1| At5g11480/F15N18_70 [Arabidopsis thaliana] gb|AED91684.1| puta 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: GTP-binding protein engB, putative 2.668e-08
Complete
sp_v3.0_unigene7812 SustainPine v3.0 2015
AutoFact: 8-oxoguanine DNA glycosylase [Populus nigra] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 8-oxoguanine DNA glycosylase 3.449e-09
Complete
sp_v3.0_unigene7849 SustainPine v3.0 2132
AutoFact: A/G-specific adenine glycosylase [Arabidopsis thaliana] gb|AEE83174.1| A/G-specific adenine glycosylase [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Putative Complete
sp_v3.0_unigene7950 SustainPine v3.0 1112
AutoFact: ubiquitin conjugating enzyme-like [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carrier protein 0.0
Complete
sp_v3.0_unigene8058 SustainPine v3.0 1484
AutoFact: putative formamidopyrimidine-DNA glycosylase 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Putative formamidopyrimidine-DNA glycosylase 1 9.264e-09
N-terminus
sp_v3.0_unigene8984 SustainPine v3.0 636
AutoFact: DNA glycosylase (Fragment) n=1 Tax=Populus trichocarpa RepID=B9MTP0_POPTR 0.0
FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
Sma3: Repressor of silencing 1 1.385e-08
C-terminus
sp_v3.0_unigene9860 SustainPine v3.0 1583
AutoFact: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9SRE3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein MLO, putative 1.247e-16
C-terminus
sp_v3.0_unigene12272 SustainPine v3.0 927
AutoFact: endonuclease III [Arabidopsis thaliana] gb|AAD26474.2| putative endonuclease [Arabidopsis thaliana] gb|AEC08549.1| endonuclease III [Arabidopsis thaliana] 1.0e-36
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
C-terminus
sp_v3.0_unigene12310 SustainPine v3.0 702
AutoFact: Unassigned protein
FL-Next: sp=Protein ROS1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Repressor of silencing 1 1.922e-08
Putative C-terminus
sp_v3.0_unigene12466 SustainPine v3.0 762
AutoFact: putative Mlo (pathogen resistance) protein [Oryza sativa Japonica Group] gb|EEE51332.1| hypothetical protein OsJ_32315 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein MLO, putative 3.598e-28
Putative C-terminus
sp_v3.0_unigene16083 SustainPine v3.0 1189
AutoFact: Ubiquitin carrier protein (Fragment) n=2 Tax=Magnoliophyta RepID=Q677E9_HYAOR 5.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carrier protein 1.054e-16
Putative Complete
sp_v3.0_unigene22080 SustainPine v3.0 293
AutoFact: barley mlo defense gene homolog6 [Zea mays] gb|AAK38342.1| seven transmembrane protein Mlo6 [Zea mays] gb|ACN27049.1| unknown [Zea mays] 4.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein MLO, putative 1.776e-20
Internal
sp_v3.0_unigene23445 SustainPine v3.0 522
AutoFact: Ubiquitin-conjugating enzyme E2-16 kDa n=48 Tax=Fungi/Metazoa group RepID=UBC1_MAGO7 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carrier protein 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain