Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: modification-dependent protein catabolic process

Term: GO:0019941  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene130752 SustainPine v3.0 249
• AutoFact: E3 ubiquitin-protein ligase BRE1-like 2 [Arabidopsis thaliana] gb|ABJ17142.1| At1g55255 [Arabidopsis thaliana] gb|AEE33211.1| E3 ubiquitin-protein ligase BRE1-like 2 [Arabidopsis thaliana] 3.0e-19
• FL-Next: sp=E3 ubiquitin-protein ligase BRE1-like 2; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: E3 ubiquitin-protein ligase BRE1-like 2 2.613e-08
C-terminus
sp_v3.0_unigene130800 SustainPine v3.0 363
• AutoFact: Ubiquitin-protein ligase, PUB13 n=2 Tax=Selaginella moellendorffii RepID=D8SNN8_SELML 3.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: E3 ubiquitin ligase PUB14, putative 7.248e-07
Internal
sp_v3.0_unigene130863 SustainPine v3.0 185
• AutoFact: ubiquitin-protein ligase 2 [Arabidopsis thaliana] 2.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: E3 ubiquitin protein ligase upl2, putative 8.71e-09
Internal
sp_v3.0_unigene131334 SustainPine v3.0 375
• AutoFact: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9RT88_RICCO 3.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene133302 SustainPine v3.0 339
• AutoFact: Ubiquitin carrier protein n=1 Tax=Populus trichocarpa RepID=B9HDK6_POPTR 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin carrier protein 1.76395e-41
N-terminus
sp_v3.0_unigene133771 SustainPine v3.0 551
• AutoFact: putative ring-box Roc1/Rbx1/Hrt1 protein [Olimarabidopsis pumila] 8.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RING-box protein 1a 1.107e-16
Putative Complete
sp_v3.0_unigene137312 SustainPine v3.0 302
• AutoFact: E3 ubiquitin-protein ligase UPL3 [Arabidopsis thaliana] gb|AEE86953.1| E3 ubiquitin-protein ligase UPL3 [Arabidopsis thaliana] 9.0e-34
• FL-Next: sp=E3 ubiquitin-protein ligase UPL3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene137422 SustainPine v3.0 204
• AutoFact: ubiquitin ligase protein cop1, putative (EC:1.3.1.74) 2.0e-14
• FL-Next: sp=Protein SPA1-RELATED 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Ubiquitin ligase protein cop1, putative 3.622e-08
Internal
sp_v3.0_unigene138455 SustainPine v3.0 724
• AutoFact: Ring zinc finger protein-like n=1 Tax=Oryza sativa Japonica Group RepID=Q6EPF2_ORYSJ 5.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative cleavage and polyadenylation specifity factor 9.374e-08
N-terminus
sp_v3.0_unigene138723 SustainPine v3.0 321
• AutoFact: Ubiquitin-activating enzyme E1 (Fragment) n=1 Tax=Vitis vinifera RepID=D7SJT2_VITVI 9.0e-35
• FL-Next: sp=Ubiquitin-activating enzyme E1 2; Triticum aestivum (Wheat). 0.0
• Sma3: Ubiquitin-activating enzyme E1 1.376e-39
Internal
sp_v3.0_unigene139111 SustainPine v3.0 244
• AutoFact: Ubiquitin carrier protein n=1 Tax=Picea sitchensis RepID=A9NTD0_PICSI 8.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin carrier protein 1.029e-11
C-terminus
sp_v3.0_unigene140323 SustainPine v3.0 381
• AutoFact: UV-damaged DNA binding factor - like protein [Arabidopsis thaliana] 1.0e-14
• FL-Next: sp=DNA damage-binding protein 1a; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene140436 SustainPine v3.0 492
• AutoFact: TIR1/AFB auxin receptor protein PintaAFB4A n=2 Tax=Pinus taeda RepID=C9EHS9_PINTA 1.0e-35
• FL-Next: tr=TIR1/AFB auxin receptor protein PintaAFB4A; Pinus taeda (Loblolly pine). 0.0
• Sma3: Transport inhibitor response 1-like protein 2.643e-09
Internal
sp_v3.0_unigene140699 SustainPine v3.0 566
• AutoFact: Ubiquitin carrier protein n=1 Tax=Picea sitchensis RepID=D5A9Q7_PICSI 0.0
• FL-Next: sp=Ubiquitin-conjugating enzyme E2 20; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Ubiquitin carrier protein 0.0
N-terminus
sp_v3.0_unigene141576 SustainPine v3.0 285
• AutoFact: Tubby-like protein n=1 Tax=Lemna paucicostata RepID=Q9SXI3_9ARAE 8.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Tubby-like protein 4.449e-22
C-terminus
sp_v3.0_unigene142203 SustainPine v3.0 452
• AutoFact: putative ubiquitin activating enzyme E1 [Arabidopsis thaliana] 7.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NEDD8-activating enzyme E1 catalytic subunit 4.17e-09
Misassembled
sp_v3.0_unigene142235 SustainPine v3.0 252
• AutoFact: putative ubiquitin activating enzyme E1 [Arabidopsis thaliana] 3.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NEDD8-activating enzyme E1 catalytic subunit 1.736e-09
Internal
sp_v3.0_unigene142285 SustainPine v3.0 940
• AutoFact: Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH 5.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Polyubiquitin 1.302e-07
Putative Complete
sp_v3.0_unigene142472 SustainPine v3.0 567
• AutoFact: amyloid beta precursor protein binding protein 1 [Arabidopsis thaliana] gb|AEE27799.1| amyloid beta precursor protein binding protein 1 [Arabidopsis thaliana] 4.0e-30
• FL-Next: sp=NEDD8-activating enzyme E1 regulatory subunit; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene142553 SustainPine v3.0 434
• AutoFact: RecName: Full=Autophagy-related protein 8; AltName: Full=Autophagy-related ubiquitin-like modifier ATG8; Flags: Precursor gb|ABO46011.1| autophagy 8 [Glomerella lindemuthiana] dbj|BAH60888.1| autophagy-related protein 8 [Colletotrichum lagenarium] gb|EFQ3 5.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Autophagy-related protein 8 1.912e-13
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain