Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA methylation

Term: GO:0006306  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene59107 SustainPine v3.0 342
• AutoFact: pentatricopeptide, putative [Oryza sativa Japonica Group] gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group] 4.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 5.382e-14
C-terminus
sp_v3.0_unigene59314 SustainPine v3.0 257
• AutoFact: Cytosine-specific methyltransferase n=1 Tax=Selaginella moellendorffii RepID=D8RTV8_SELML 5.0e-16
• FL-Next: sp=DNA (cytosine-5)-methyltransferase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene59624 SustainPine v3.0 448
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 1.4013e-45
C-terminus
sp_v3.0_unigene61249 SustainPine v3.0 138
• AutoFact: Putative DNA cytosine methyltransferase Zmet3 n=1 Tax=Oryza sativa Japonica Group RepID=Q8H7W0_ORYSJ 4.0e-13
• FL-Next: sp=DNA (cytosine-5)-methyltransferase DRM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA methyltransferase 7.961e-10
Internal
sp_v3.0_unigene61426 SustainPine v3.0 308
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070 gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana] gb|AEC07259.1| pentatricopeptide repe 7.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide, putative, expressed 2.959e-12
C-terminus
sp_v3.0_unigene61598 SustainPine v3.0 279
• AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Picea abies RepID=B3U1V0_PICAB 1.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 0.0
Putative C-terminus
sp_v3.0_unigene61667 SustainPine v3.0 292
• AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U8_CYCRE 9.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 0.0
Internal
sp_v3.0_unigene61790 SustainPine v3.0 235
• AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 0.0
Putative C-terminus
sp_v3.0_unigene61905 SustainPine v3.0 237
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 0.0
Putative C-terminus
sp_v3.0_unigene61928 SustainPine v3.0 274
• AutoFact: Pentatricopeptide repeat protein 71 n=1 Tax=Funaria hygrometrica RepID=F5CAD9_FUNHY 2.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide, putative, expressed 4.09e-10
C-terminus
sp_v3.0_unigene62960 SustainPine v3.0 228
• AutoFact: DNA-directed RNA polymerase D subunit 2a n=3 Tax=Arabidopsis RepID=RPD2A_ARATH 2.0e-13
• FL-Next: sp=DNA-directed RNA polymerase D subunit 2a; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 4.708e-12
Internal
sp_v3.0_unigene63155 SustainPine v3.0 202
• AutoFact: Cytosine-specific methyltransferase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RVR7_PHYPA 7.0e-15
• FL-Next: sp=DNA (cytosine-5)-methyltransferase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Cytosine-specific methyltransferase 0.0
Internal
sp_v3.0_unigene63370 SustainPine v3.0 246
• AutoFact: Pentatricopeptide repeat protein 78 (Fragment) n=1 Tax=Funaria hygrometrica RepID=F5CAE0_FUNHY 6.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Tetratricopeptide-like helical 2.703e-09
C-terminus
sp_v3.0_unigene63395 SustainPine v3.0 141
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 7.46e-09
C-terminus
sp_v3.0_unigene63990 SustainPine v3.0 180
• AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Lepidogyna hodgsoniae RepID=B3U1Z4_9MARC 6.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 0.0
Internal
sp_v3.0_unigene64107 SustainPine v3.0 209
• AutoFact: Os02g0494700 protein n=2 Tax=Oryza sativa RepID=Q0E138_ORYSJ 5.0e-21
• FL-Next: sp=Transcriptional activator DEMETER; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Repressor of silencing 1 2.159e-08
Internal
sp_v3.0_unigene64413 SustainPine v3.0 187
• AutoFact: YTH domain containing protein 4.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Yth domain-containing protein, putative 2.147e-27
Internal
sp_v3.0_unigene64830 SustainPine v3.0 265
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758 gb|AEE86306.1| pentatricopeptide repeat-containing 4.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Tetratricopeptide-like helical 2.132e-09
C-terminus
sp_v3.0_unigene64883 SustainPine v3.0 213
• AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Picea abies RepID=B3U1V1_PICAB 2.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 0.0
Internal
sp_v3.0_unigene65115 SustainPine v3.0 227
• AutoFact: Isoform 2 of Transcriptional activator DEMETER n=1 Tax=Arabidopsis thaliana RepID=Q8LK56-2 6.0e-14
• FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
• Sma3: Repressor of silencing 1 6.042e-09
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain