Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA methylation

Term: GO:0006306  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene168019 SustainPine v3.0 206
AutoFact: DNA (Cytosine-5)-methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RP83_RICCO 6.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene168284 SustainPine v3.0 131
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070 gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana] gb|AEC07259.1| pentatricopeptide repe 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene168306 SustainPine v3.0 233
AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE 4.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat protein 0.0
Internal
sp_v3.0_unigene168319 SustainPine v3.0 175
AutoFact: Unassigned protein
FL-Next: sp=Cytosine-specific methyltransferase; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: Cytosine-specific methyltransferase 1.706e-07
Internal
sp_v3.0_unigene184011 SustainPine v3.0 564
AutoFact: Putative DNA cytosine methyltransferase Zmet3 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=DNA (cytosine-5)-methyltransferase DRM2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA methyltransferase 6.659e-10
Internal
sp_v3.0_unigene187230 SustainPine v3.0 197
AutoFact: DNA methyl transferase4 [Zea mays] gb|AAK40306.1| DNA methyltransferase ZMET4 [Zea mays] gb|ACF82728.1| unknown [Zea mays] 2.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA methyltransferase 1.765e-07
Internal
sp_v3.0_unigene189369 SustainPine v3.0 643
AutoFact: DNA methyltransferase PMT1-like protein [Arabidopsis thaliana] 6.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA methyltransferase 2.849e-11
C-terminus
sp_v3.0_unigene193150 SustainPine v3.0 607
AutoFact: DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3S2W9_TRIAD 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-directed RNA polymerase 0.0
Putative Complete
sp_v3.0_unigene195195 SustainPine v3.0 533
AutoFact: Chromatin remodeling 38 n=5 Tax=Camelineae RepID=Q9M297_ARATH 3.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 3.305e-08
Putative C-terminus
sp_v3.0_unigene195366 SustainPine v3.0 304
AutoFact: Protein argonaute 7 n=3 Tax=Oryza sativa RepID=AGO7_ORYSJ 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Argonaute protein group 1.402e-36
Internal
sp_v3.0_unigene197474 SustainPine v3.0 314
AutoFact: Cytosine-specific methyltransferase n=1 Tax=Ricinus communis RepID=B9RWB0_RICCO 2.0e-27
FL-Next: sp=DNA (cytosine-5)-methyltransferase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Cytosine-specific methyltransferase 1.325e-32
Internal
sp_v3.0_unigene197923 SustainPine v3.0 241
AutoFact: Pentatricopeptide repeat protein 91 n=3 Tax=Funariaceae RepID=F5CAE1_FUNHY 1.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat protein 0.0
Putative C-terminus
sp_v3.0_unigene198581 SustainPine v3.0 397
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070 gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana] gb|AEC07259.1| pentatricopeptide repe 2.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat protein 1.4013e-45
C-terminus
sp_v3.0_unigene199066 SustainPine v3.0 428
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230 gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat protein 5.619e-36
C-terminus
sp_v3.0_unigene204405 SustainPine v3.0 309
AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Picea abies RepID=B3U1V1_PICAB 7.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat protein 1.962e-31
C-terminus
sp_v3.0_unigene207687 SustainPine v3.0 1196
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_83.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7SMH3_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP binding protein, putative 1.831e-11
C-terminus
sp_v3.0_unigene208683 SustainPine v3.0 407
AutoFact: transcriptional activator DEMETER [Arabidopsis thaliana] sp|Q8LK56.2|DME_ARATH RecName: Full=Transcriptional activator DEMETER; AltName: Full=DNA glycosylase-related protein DME gb|ABC61677.1| DNA glycosylase DEMETER [Arabidopsis thaliana] gb|AED90761.1| 5.60519e-45
FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
Sma3: Repressor of silencing 1 1.514e-08
Internal
sp_v3.0_unigene209486 SustainPine v3.0 420
AutoFact: DNA methyltransferase PMT1-like protein [Arabidopsis thaliana] 9.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA methyltransferase 1.923e-11
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain