Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA methylation

Term: GO:0006306  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene245 SustainPine v3.0 1743
• AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Yth domain-containing protein, putative 4.285e-27
Putative C-terminus
sp_v3.0_unigene321 SustainPine v3.0 2895
• AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: YT521-B-like family protein, expressed 4.162e-11
Complete
sp_v3.0_unigene878 SustainPine v3.0 1323
• AutoFact: DEMETER protein [Arabidopsis thaliana] 0.0
• FL-Next: sp=Transcriptional activator DEMETER; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Repressor of silencing 1 6.505e-09
C-terminus
sp_v3.0_unigene1535 SustainPine v3.0 4578
• AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SV38_VITVI 0.0
• FL-Next: sp=DNA-directed RNA polymerase subunit beta; Keteleeria davidiana (David's keteleeria) (Pseudotsuga davidiana). Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase 0.0
Complete
sp_v3.0_unigene1838 SustainPine v3.0 4729
• AutoFact: Cytosine-specific methyltransferase n=1 Tax=Elaeis guineensis RepID=B4XTS8_ELAGV 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cytosine-specific methyltransferase 0.0
Complete
sp_v3.0_unigene1992 SustainPine v3.0 2754
• AutoFact: Embryonic flower 2 n=1 Tax=Yucca filamentosa RepID=Q1W6L0_YUCFI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Embryonic flower 2 2.227e-24
Complete
sp_v3.0_unigene2043 SustainPine v3.0 384
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 1.4013e-45
C-terminus
sp_v3.0_unigene2454 SustainPine v3.0 2940
• AutoFact: Cytosine-specific methyltransferase n=1 Tax=Elaeis guineensis RepID=B4XTS9_ELAGV 0.0
• FL-Next: sp=DNA (cytosine-5)-methyltransferase 3; Zea mays (Maize). 0.0
• Sma3: Cytosine-specific methyltransferase 1.644e-28
C-terminus
sp_v3.0_unigene2702 SustainPine v3.0 500
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 0.0
C-terminus
sp_v3.0_unigene2918 SustainPine v3.0 550
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 2.156e-11
C-terminus
sp_v3.0_unigene4783 SustainPine v3.0 566
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g57430, chloroplastic; Flags: Precursor gb|AEE79654.1| pentatricopeptide repeat-containing protein [Ara 3.00004e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 0.0
C-terminus
sp_v3.0_unigene4888 SustainPine v3.0 180
• AutoFact: Unassigned protein
• FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
• Sma3: Repressor of silencing 1 9.077e-09
Internal
sp_v3.0_unigene7962 SustainPine v3.0 2221
• AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 0.0
• FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Argonaute family member 1.706e-18
C-terminus
sp_v3.0_unigene8261 SustainPine v3.0 339
• AutoFact: DRM-type DNA-methyltransferase n=1 Tax=Elaeis guineensis RepID=B4XTT0_ELAGV 1.0e-24
• FL-Next: sp=DNA (cytosine-5)-methyltransferase DRM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Putative DNA cytosine methyltransferase Zmet3 2.643e-08
C-terminus
sp_v3.0_unigene8364 SustainPine v3.0 1488
• AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 0.0
• FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Argonaute protein group 4.374e-14
N-terminus
sp_v3.0_unigene8581 SustainPine v3.0 1782
• AutoFact: Domains rearranged methyltransferase n=3 Tax=Nicotiana RepID=B1GYI2_NICSY 0.0
• FL-Next: tr=DNA methyltransferase; subsp. trichocarpa). 0.0
• Sma3: DNA methyltransferase 4.44e-13
Complete
sp_v3.0_unigene8984 SustainPine v3.0 636
• AutoFact: DNA glycosylase (Fragment) n=1 Tax=Populus trichocarpa RepID=B9MTP0_POPTR 0.0
• FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
• Sma3: Repressor of silencing 1 1.385e-08
C-terminus
sp_v3.0_unigene9069 SustainPine v3.0 2172
• AutoFact: Pentatricopeptide repeat protein 79 (Fragment) n=2 Tax=Funariaceae RepID=F5CAE5_FUNHY 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 1.289e-16
Complete
sp_v3.0_unigene9655 SustainPine v3.0 1121
• AutoFact: Piwi domain containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Argonaute protein group 1.529e-36
Putative Complete
sp_v3.0_unigene11420 SustainPine v3.0 797
• AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 0.0
• FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Argonaute protein group 1.317e-33
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain