Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA splicing

Term: GO:0008380  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene101437 SustainPine v3.0 597
• AutoFact: CRS1_YhbY domain containing protein 4.0e-14
• FL-Next: sp=CRS2-associated factor 1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 2.13e-12
C-terminus
sp_v3.0_unigene102065 SustainPine v3.0 607
• AutoFact: Intron maturase, type II family protein n=2 Tax=Arabidopsis thaliana RepID=Q9FJR9_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA binding protein, putative 6.613e-06
Internal
sp_v3.0_unigene103109 SustainPine v3.0 542
• AutoFact: Unassigned protein
• FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Internal
sp_v3.0_unigene103137 SustainPine v3.0 222
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein F8F6_200; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene103262 SustainPine v3.0 370
• AutoFact: Cytochrome b n=11 Tax=Spermatophyta RepID=E1CBG8_CYCTA 2.0e-31
• FL-Next: sp=Cytochrome b; Triticum aestivum (Wheat). Mitochondrion. 0.0
• Sma3: Cytochrome b 3.143e-19
N-terminus
sp_v3.0_unigene103356 SustainPine v3.0 430
• AutoFact: Probable pre-mRNA-splicing factor ATP-dependent RNA helicase n=2 Tax=Arabidopsis thaliana RepID=DHX8_ARATH 4.99983e-42
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Putative RNA helicase 4.763e-07
Internal
sp_v3.0_unigene105982 SustainPine v3.0 241
• AutoFact: CRS2-associated factor 1 [Arabidopsis thaliana] sp|Q9SL79.2|CAF1P_ARATH RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor gb|AAK76556.1| unkn 4.0e-25
• FL-Next: sp=CRS2-associated factor 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 4.227e-13
Internal
sp_v3.0_unigene106519 SustainPine v3.0 242
• AutoFact: CRS2-associated factor 1, chloroplastic precursor [Zea mays] sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor gb|AAP 4.0e-26
• FL-Next: sp=CRS2-associated factor 1, chloroplastic; Zea mays (Maize). 0.0
• Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 7.939e-13
Internal
sp_v3.0_unigene108714 SustainPine v3.0 312
• AutoFact: CRS2-associated factor 2, chloroplastic n=2 Tax=Arabidopsis RepID=CAF2P_ARATH 1.0e-38
• FL-Next: sp=CRS2-associated factor 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 1.134e-12
Internal
sp_v3.0_unigene110041 SustainPine v3.0 473
• AutoFact: helicase , IBR and zinc finger protein domain-containing protein [Arabidopsis thaliana] gb|AED91533.1| helicase , IBR and zinc finger protein domain-containing protein [Arabidopsis thaliana] 7.0e-38
• FL-Next: sp=Putative uncharacterized protein At4g01020, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.852e-21
Internal
sp_v3.0_unigene110720 SustainPine v3.0 189
• AutoFact: Maturase K (Fragment) n=1 Tax=Pinus thunbergii RepID=E5KG06_PINTH 2.0e-28
• FL-Next: sp=Maturase K; Pinus caribaea var. caribaea. Plastid; Chloroplast. 0.0
• Sma3: Maturase K 8.009e-06
Internal
sp_v3.0_unigene112282 SustainPine v3.0 317
• AutoFact: ATP-dependent RNA helicase, putative n=3 Tax=Arabidopsis thaliana RepID=Q9C7G2_ARATH 8.99998e-41
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 5.012e-24
Internal
sp_v3.0_unigene116057 SustainPine v3.0 245
• AutoFact: Unassigned protein
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Putative N-terminus
sp_v3.0_unigene116330 SustainPine v3.0 363
• AutoFact: [K] COG1958 Small nuclear ribonucleoprotein (snRNP) homolog 5.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein f, putative 6.913e-09
Complete
sp_v3.0_unigene119809 SustainPine v3.0 352
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=2 Tax=Entamoeba RepID=B0ET56_ENTDI 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative N-terminus
sp_v3.0_unigene122445 SustainPine v3.0 109
• AutoFact: Maturase K n=58 Tax=Pinus RepID=MATK_PINCE 1.0e-06
• FL-Next: sp=Maturase K 1; Pinus morrisonicola. Plastid; Chloroplast. 0.0
• Sma3: Intron maturase 1.344e-06
Internal
sp_v3.0_unigene126572 SustainPine v3.0 903
• AutoFact: Intron maturase, type II family protein [Arabidopsis thaliana] dbj|BAB10231.1| unnamed protein product [Arabidopsis thaliana] gb|AED95448.1| Intron maturase, type II family protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA binding protein, putative 2.533e-06
N-terminus
sp_v3.0_unigene126946 SustainPine v3.0 309
• AutoFact: polypyrimidine track-binding protein homologue [Cicer arietinum] 5.0e-14
• FL-Next: sp=Polypyrimidine tract-binding protein homolog 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene127301 SustainPine v3.0 647
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=4 Tax=Pinaceae RepID=C9EGT5_9CONI 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene127429 SustainPine v3.0 604
• AutoFact: Potassium channel regulatory factor, putative n=1 Tax=Ricinus communis RepID=B9S407_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Prp18 domain containing protein 1.818e-09
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain