Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA splicing

Term: GO:0008380  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene155756 SustainPine v3.0 425
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 6.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pre-mRNA branch site p14-like protein 6.096e-09
Complete
sp_v3.0_unigene155820 SustainPine v3.0 395
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Cochliobolus lunatus RepID=Q1EHH1_CURLU 2.8026e-45
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
N-terminus
sp_v3.0_unigene155901 SustainPine v3.0 567
AutoFact: Peptidyl-prolyl cis-trans isomerase n=2 Tax=Micromonas RepID=C1FFK0_MICSR 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative Complete
sp_v3.0_unigene155975 SustainPine v3.0 281
AutoFact: Peptidyl-prolyl cis-trans isomerase n=2 Tax=Chlamydomonadales RepID=A8IVQ7_CHLRE 4.0e-36
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Internal
sp_v3.0_unigene156294 SustainPine v3.0 223
AutoFact: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [Arabidopsis thaliana] emb|CAB82945.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAM53340.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAQ56774 4.0e-24
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene156508 SustainPine v3.0 294
AutoFact: DEAD/DEAH box helicase n=1 Tax=Polysphondylium pallidum RepID=D3B6F6_POLPA 9.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative pre-mRNA splicing factor RNA helicase 8.172e-09
Internal
sp_v3.0_unigene156730 SustainPine v3.0 381
AutoFact: Peptidyl-prolyl cis-trans isomerase n=3 Tax=Theileria parva RepID=Q4N970_THEPA 2.0e-37
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus taeda (Loblolly pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene157093 SustainPine v3.0 541
AutoFact: Peptidyl-prolyl cis-trans isomerase cyp6 n=1 Tax=Rhizopus oryzae RepID=CYP6_RHIOR 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene157110 SustainPine v3.0 479
AutoFact: ATP synthase subunit alpha n=1 Tax=Clostridium paradoxum RepID=Q0ZS21_CLOPD 2.0e-38
FL-Next: tr=ATPase alpha subunit; Larix griffithiana. Mitochondrion. 0.0
Sma3: ATP synthase subunit alpha 2.901e-20
Internal
sp_v3.0_unigene157401 SustainPine v3.0 388
AutoFact: Peptidyl-prolyl cis-trans isomerase n=2 Tax=Onchocercidae RepID=E1FRU8_LOALO 1.0e-35
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
N-terminus
sp_v3.0_unigene157693 SustainPine v3.0 456
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thalassiosira pseudonana RepID=B8C7H9_THAPS 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Internal
sp_v3.0_unigene157985 SustainPine v3.0 351
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Trichomonas vaginalis RepID=A2EC21_TRIVA 3.0e-39
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative C-terminus
sp_v3.0_unigene158226 SustainPine v3.0 256
AutoFact: pre-mRNA branch site protein p14 [Arabidopsis thaliana] ref|XP_002873554.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] sp|Q9FMP4.1|PM14_ARATH RecName: Full=Pre-mRNA branch site p14-like protein dbj|BAB10037.1| unnamed prot 7.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pre-mRNA branch site p14-like protein 6.096e-09
C-terminus
sp_v3.0_unigene158349 SustainPine v3.0 502
AutoFact: Peptidyl-prolyl cis-trans isomerase B n=1 Tax=Dictyostelium discoideum RepID=PPIB_DICDI 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
N-terminus
sp_v3.0_unigene158614 SustainPine v3.0 289
AutoFact: Peptidyl-prolyl cis-trans isomerase n=2 Tax=Andropogoneae RepID=C5X6U8_SORBI 4.0e-24
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
N-terminus
sp_v3.0_unigene158675 SustainPine v3.0 116
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Blastocystis hominis RepID=D8M872_BLAHO 4.0e-10
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 8.912e-20
Putative N-terminus
sp_v3.0_unigene158750 SustainPine v3.0 432
AutoFact: Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Vaucheria litorea RepID=Q9ATC5_VAULI 7.0e-28
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus taeda (Loblolly pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene158765 SustainPine v3.0 428
AutoFact: Peptidyl-prolyl cis-trans isomerase CYP20-1 n=2 Tax=Arabidopsis RepID=CP20A_ARATH 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative C-terminus
sp_v3.0_unigene159007 SustainPine v3.0 293
AutoFact: ATP synthase subunit alpha n=1 Tax=Bursaphelenchus xylophilus RepID=D1MBR5_BURXY 1.4013e-45
FL-Next: tr=ATPase alpha subunit; Larix griffithiana. Mitochondrion. 0.0
Sma3: ATP synthase subunit alpha 8.468e-19
Internal
sp_v3.0_unigene161012 SustainPine v3.0 359
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain