Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA splicing

Term: GO:0008380  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene144499 SustainPine v3.0 970
AutoFact: Pre-mRNA-processing factor 19 [Arabidopsis thaliana] sp|Q94BR4.1|PR19A_ARATH RecName: Full=Pre-mRNA-processing factor 19 homolog 1; AltName: Full=MOS4-associated complex protein 3A; Short=MAC protein 3A; AltName: Full=Plant U-box protein 59; AltName: Full 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: GAST1 protein, putative 1.287e-07
N-terminus
sp_v3.0_unigene145187 SustainPine v3.0 585
AutoFact: Peptidyl-prolyl cis-trans isomerase n=4 Tax=Pinaceae RepID=C9EGT5_9CONI 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
N-terminus
sp_v3.0_unigene146030 SustainPine v3.0 590
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Cryptomeria japonica RepID=Q1XG52_CRYJA 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Complete
sp_v3.0_unigene146159 SustainPine v3.0 664
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Gerbera hybrid cultivar RepID=A8CYN7_GERHY 2.0e-26
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus taeda (Loblolly pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Complete
sp_v3.0_unigene146273 SustainPine v3.0 658
AutoFact: Peptidyl-prolyl cis-trans isomerase n=3 Tax=Pinaceae RepID=A5HIY2_PINTA 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus taeda (Loblolly pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Complete
sp_v3.0_unigene147956 SustainPine v3.0 379
AutoFact: MatR n=7 Tax=Abies RepID=B9VLF2_ABISA 0.0
FL-Next: tr=MatR; Abies nephrolepis. Mitochondrion. 0.0
Sma3: Maturase 0.0
Putative C-terminus
sp_v3.0_unigene148899 SustainPine v3.0 284
AutoFact: CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana] dbj|BAB01105.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36264.1| unknown protein [Arabidopsis thaliana] gb|AEE76091.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis 4.0e-29
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene149675 SustainPine v3.0 110
AutoFact: Maturase (Fragment) n=1 Tax=Pinus sp. Qiu 94013 RepID=Q9T671_9CONI 1.0e-11
FL-Next: tr=MatR; Abies nephrolepis. Mitochondrion. 0.0
Sma3: Maturase 0.0
Internal
sp_v3.0_unigene149692 SustainPine v3.0 162
AutoFact: Unassigned protein
FL-Next: sp=CRS2-associated factor 1, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: CRS2-associated factor 2, mitochondrial 2.258e-09
Internal
sp_v3.0_unigene150138 SustainPine v3.0 238
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Paramecium primaurelia RepID=PPIA_PARPR 3.0e-25
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Internal
sp_v3.0_unigene150242 SustainPine v3.0 368
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tetrahymena thermophila SB210 RepID=Q22YZ8_TETTH 1.0e-36
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene150467 SustainPine v3.0 412
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Meyerozyma guilliermondii ATCC 6260 RepID=A5DBT0_PICGU 9.94922e-44
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus taeda (Loblolly pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene150750 SustainPine v3.0 236
AutoFact: PREDICTED: similar to Sm protein G, partial n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48A59 2.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein polypeptide G 4.83e-13
Putative Complete
sp_v3.0_unigene151082 SustainPine v3.0 424
AutoFact: splicing factor Prp18-like protein [Arabidopsis thaliana] gb|AAD25794.1|AC006550_2 Similar to gb|U51990 pre-mRNA-splicing factor hPrp18 from Homo sapiens. ESTs gb|T46391 and gb|AA721815 come from this gene [Arabidopsis thaliana] gb|AAK25940.1|AF360230_1 u 4.0e-25
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Prp18 domain containing protein 2.796e-09
Putative C-terminus
sp_v3.0_unigene151123 SustainPine v3.0 438
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chlorella variabilis RepID=E1Z6E6_9CHLO 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene151268 SustainPine v3.0 466
AutoFact: Intron maturase, type II family protein [Arabidopsis thaliana] dbj|BAB10231.1| unnamed protein product [Arabidopsis thaliana] gb|AED95448.1| Intron maturase, type II family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RNA binding protein, putative 6.012e-06
Internal
sp_v3.0_unigene151363 SustainPine v3.0 432
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Monosiga brevicollis RepID=A9UYA2_MONBE 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative N-terminus
sp_v3.0_unigene151749 SustainPine v3.0 249
AutoFact: Small nuclear ribonucleoprotein G n=1 Tax=Phytophthora infestans T30-4 RepID=D0NS89_PHYIT 9.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: snRNP-G 4.361e-09
C-terminus
sp_v3.0_unigene151867 SustainPine v3.0 427
AutoFact: Small nuclear ribonucleoprotein G n=1 Tax=Phytophthora infestans T30-4 RepID=D0NS89_PHYIT 2.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein polypeptide G 4.921e-13
Complete
sp_v3.0_unigene152123 SustainPine v3.0 177
AutoFact: Peptidyl-prolyl cis-trans isomerase (Fragment) n=2 Tax=Tetraodontidae RepID=Q4S823_TETNG 2.0e-24
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain