Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: pseudouridine synthase activity

Term: GO:0009982  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene227 SustainPine v3.0 786
• AutoFact: Pseudouridylate synthase/ transporter n=1 Tax=Zea mays RepID=B6TRU2_MAIZE 0.0
• FL-Next: sp=H/ACA ribonucleoprotein complex subunit 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene245 SustainPine v3.0 1743
• AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Yth domain-containing protein, putative 4.285e-27
Putative C-terminus
sp_v3.0_unigene321 SustainPine v3.0 2895
• AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: YT521-B-like family protein, expressed 4.162e-11
Complete
sp_v3.0_unigene2927 SustainPine v3.0 1831
• AutoFact: suppressor of variegation1 causing pseudouridine synthase-like protein [Arabidopsis thaliana] gb|AAM66944.1| unknown [Arabidopsis thaliana] dbj|BAC42334.1| unknown protein [Arabidopsis thaliana] gb|AEC09639.1| suppressor of variegation1 causing pseudourid 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene3495 SustainPine v3.0 2667
• AutoFact: tRNA pseudouridine synthase family protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCD2_CUCME 0.0
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 3.099e-12
Putative Complete
sp_v3.0_unigene3673 SustainPine v3.0 1889
• AutoFact: H/ACA ribonucleoprotein complex subunit 4 [Arabidopsis thaliana] sp|Q9LD90.1|DKC1_ARATH RecName: Full=H/ACA ribonucleoprotein complex subunit 4; AltName: Full=Nopp-140-associated protein of 57 kDa homolog; Short=AtNAP57; AltName: Full=Nucleolar protein NA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Centromere/microtubule binding protein cbf5, putative 4.506e-08
Complete
sp_v3.0_unigene4149 SustainPine v3.0 543
• AutoFact: Pseudouridine synthase n=1 Tax=Ricinus communis RepID=B9RVG5_RICCO 1.99993e-41
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 2.528e-06
Putative C-terminus
sp_v3.0_unigene7136 SustainPine v3.0 2147
• AutoFact: tRNA pseudouridine synthase family protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCD2_CUCME 0.0
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 3.099e-12
C-terminus
sp_v3.0_unigene10945 SustainPine v3.0 344
• AutoFact: RNA pseudourine synthase 3, mitochondrial n=3 Tax=Arabidopsis RepID=PUS3_ARATH 1.0e-19
• FL-Next: Isoform 2 of RNA pseudourine synthase 3, mitochondrial OS=Arabidopsis thaliana GN=At1g78910 0.0
C-terminus
sp_v3.0_unigene12592 SustainPine v3.0 1748
• AutoFact: RNA pseudourine synthase 5 [Arabidopsis thaliana] sp|Q5M721.2|PUS5_ARATH RecName: Full=RNA pseudourine synthase 5; AltName: Full=RNA pseudouridylate synthase 5; AltName: Full=RNA-uridine isomerase 5 gb|AEE78921.1| RNA pseudourine synthase 5 [Arabidopsis t 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-uridine isomerase 5 1.988e-09
Complete
sp_v3.0_unigene14206 SustainPine v3.0 882
• AutoFact: RNA pseudourine synthase 6 [Arabidopsis thaliana] sp|Q9SVS0.1|PUS6_ARATH RecName: Full=RNA pseudourine synthase 6, chloroplastic; AltName: Full=RNA pseudouridylate synthase 6; AltName: Full=RNA-uridine isomerase 6; Flags: Precursor emb|CAB36821.1| hypothe 0.0
• FL-Next: sp=RNA pseudourine synthase 6, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: RNA-uridine isomerase 6 8.693e-10
C-terminus
sp_v3.0_unigene14483 SustainPine v3.0 454
• AutoFact: putative ribosomal large subunit pseudouridine synthase C protein [Oryza sativa Japonica Group] dbj|BAD10435.1| putative ribosomal large subunit pseudouridine synthase C protein [Oryza sativa Japonica Group] 7.0e-31
• FL-Next: sp=RNA pseudourine synthase 3, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: RNA-uridine isomerase 3 1.656e-09
Putative C-terminus
sp_v3.0_unigene14510 SustainPine v3.0 411
• AutoFact: RNA pseudourine synthase 6 [Arabidopsis thaliana] sp|Q9SVS0.1|PUS6_ARATH RecName: Full=RNA pseudourine synthase 6, chloroplastic; AltName: Full=RNA pseudouridylate synthase 6; AltName: Full=RNA-uridine isomerase 6; Flags: Precursor emb|CAB36821.1| hypothe 6.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-uridine isomerase 6 9.576e-10
Internal
sp_v3.0_unigene15089 SustainPine v3.0 1425
• AutoFact: Pseudouridine synthase (Fragment) n=2 Tax=Vitis vinifera RepID=D7T696_VITVI 0.0
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 1.624e-22
Putative Complete
sp_v3.0_unigene15509 SustainPine v3.0 1672
• AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AE97_PICSI 0.0
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 6.152e-23
Complete
sp_v3.0_unigene19257 SustainPine v3.0 3377
• AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Yth domain-containing protein, putative 2.106e-07
Complete
sp_v3.0_unigene27105 SustainPine v3.0 550
• AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AA47_PICSI 0.0
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 1.608e-16
C-terminus
sp_v3.0_unigene27490 SustainPine v3.0 2686
• AutoFact: tRNA pseudouridine synthase d, putative n=1 Tax=Ricinus communis RepID=B9RER1_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene29167 SustainPine v3.0 2249
• AutoFact: Pseudouridine synthase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TFS0_VITVI 0.0
• FL-Next: sp=Pseudouridine synthase; Vitis vinifera (Grape). 0.0
• Sma3: Pseudouridylate synthase 1.486e-25
Putative Complete
sp_v3.0_unigene35140 SustainPine v3.0 1359
• AutoFact: RNA pseudourine synthase 2 [Arabidopsis thaliana] sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA pseudourine synthase 2, chloroplastic; AltName: Full=RNA pseudouridylate synthase 2; AltName: Full=RNA-uridine isomerase 2; Flags: Precursor gb|AEE35790.1| RNA pseu 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-uridine isomerase 2 4.622e-09
C-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain